View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21174_low_5 (Length: 404)
Name: NF21174_low_5
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21174_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 30941970 - 30942206
Alignment:
| Q |
23 |
gtctgcagctacaaagcaacaaggtcggtccaagggcaaggcaacaaaggcaattgccttaaacctccaataatttttgaaatcttacttgataaaaagg |
122 |
Q |
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| T |
30941970 |
gtctgcagctacaaagcagcaaggtcggtccaagggtaaggcaacaaaggcaatcgccttaaacctccaatattttttgaaatcttacttgataaaaatg |
30942069 |
T |
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| Q |
123 |
ccacatacttttcgagtgaaataaaaagacttgtattatactattttcaaatttaagttaataaaatcttttttaacattaatattgtctcaagtcccaa |
222 |
Q |
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| T |
30942070 |
ccacatacttttcgagtgaaataaaaagacttgtattatactattttcaaatttaagttaataaaatcttttttaacattaatatt-------gtcccaa |
30942162 |
T |
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| Q |
223 |
cacaacaaagatgaaatcagttgacttaaaaataaacgaaatcg |
266 |
Q |
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| T |
30942163 |
cacaacaaagatgaaatcagttgacttaaaaataaacgaaatcg |
30942206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 30942273 - 30942334
Alignment:
| Q |
333 |
gcaggagcataggtcgctacgctcctcacacacaaataacaattgggcctaatgcacctttg |
394 |
Q |
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| T |
30942273 |
gcaggagcataggtcgctacgctcctcacacacaaataacaattgggcctaatgcacctttg |
30942334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 33702630 - 33702705
Alignment:
| Q |
138 |
gtgaaataaaaagacttgtattatactattttcaaattt-aagttaataaaatcttttttaacattaatattgtct |
212 |
Q |
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| T |
33702630 |
gtgaaataaaaggcctcatattatactattttcaaattttaaattaataaaatcttgtttaaaattaatattgtct |
33702705 |
T |
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