View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21174_low_6 (Length: 387)
Name: NF21174_low_6
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21174_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 30299937 - 30300289
Alignment:
| Q |
15 |
atgaatgagtaaaatctaattaagatatgtttatttttgtttgatttcaaatttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30299937 |
atgaatgagtaaaatctaattaagatatgtttatttttgtgtgatttcaaatttgaaggtgaggaagacaatgtgataagccaaatagagagaccagtga |
30300036 |
T |
|
| Q |
115 |
aagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300037 |
aagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30300136 |
T |
|
| Q |
215 |
ggaagaaggtcgaagccagagaaaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtc |
314 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300137 |
ggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtc |
30300236 |
T |
|
| Q |
315 |
atagctcatagtgagcagagaataaaacggcaatatcttgtatctagagttcc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300237 |
atagctcatagtgagcagagaataaaacggcaatatcttgtatctagagttcc |
30300289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 30287061 - 30287414
Alignment:
| Q |
16 |
tgaatgagtaaaatctaattaagatatgtttattttt-gtttgatttcaaatttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtga |
114 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
30287061 |
tgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaatagagagaccagtga |
30287160 |
T |
|
| Q |
115 |
aagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287161 |
aagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30287260 |
T |
|
| Q |
215 |
ggaagaaggtcgaagccagagaaaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtc |
314 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30287261 |
ggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaact |
30287360 |
T |
|
| Q |
315 |
atagctcatagtgagcagagaataaaacggcaatatcttgtatctagagttcct |
368 |
Q |
| |
|
|||||||||| |||| | |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
30287361 |
atagctcataatgagaaaagaataaaacggcattatcttgtaactagagttcct |
30287414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 30304729 - 30305070
Alignment:
| Q |
16 |
tgaatgagtaaaatctaattaagatatgtttattttt-gtttgatttcaaatttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtga |
114 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30304729 |
tgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtga |
30304828 |
T |
|
| Q |
115 |
aagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30304829 |
aagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30304928 |
T |
|
| Q |
215 |
ggaagaaggtcgaagccagagaaaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtc |
314 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||| | || |||| |
|
|
| T |
30304929 |
ggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcaagtatgatatatggagct |
30305028 |
T |
|
| Q |
315 |
atagctcatagtgagcagagaataaaacggcaatatcttgta |
356 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
30305029 |
atagctaataatgagcgatgaataaaacggcattatcttgta |
30305070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 67 - 356
Target Start/End: Original strand, 30315647 - 30315936
Alignment:
| Q |
67 |
ttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30315647 |
ttgaaggtgaggaagacaatgtgataagccaaatagagagaccagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaa |
30315746 |
T |
|
| Q |
167 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcttatatcttcaattttggga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
30315747 |
tcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttggga |
30315846 |
T |
|
| Q |
267 |
gtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttgta |
356 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30315847 |
gctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgta |
30315936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 30292095 - 30292346
Alignment:
| Q |
16 |
tgaatgagtaaaatctaattaagatatgtttattttt-gtttgatttcaaatttgaaggtgaggaagacaatgtgataagccaaattcagagaccagtga |
114 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30292095 |
tgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaatgtgataagccaaattcagagaccagtga |
30292194 |
T |
|
| Q |
115 |
aagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292195 |
aagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaagggaaag |
30292294 |
T |
|
| Q |
215 |
ggaagaaggtcgaagccagagaaaaagggagcttatatcttcaattttggga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
30292295 |
ggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcggga |
30292346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 46810441 - 46810582
Alignment:
| Q |
70 |
aaggtgaggaagacaatgtgataagccaaattcagagaccagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatca |
169 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| |||| ||||| |||||| ||||||| || |
|
|
| T |
46810441 |
aaggtgaggatgacaatgtgataagtcaaatagaaaggccagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaacca |
46810540 |
T |
|
| Q |
170 |
gagacaatcttactttgcaaatgctcagcctcaacaaaggga |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46810541 |
aagacaatcttactttgcaaatgctcaacctcaacaaaggga |
46810582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University