View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21174_low_8 (Length: 348)
Name: NF21174_low_8
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21174_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 5982656 - 5982968
Alignment:
| Q |
21 |
atcgtccaccaccaatgccttggtaccaacctcaacatgctggatatgcaataccaccaccaatgtatccaggatcagggcctctacatggttacaatgg |
120 |
Q |
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| T |
5982656 |
atcgtccaccaccaatgccttggtaccaacctcaacatgctggatatgcaataccaccacaaatgtatccaggatcagggcctctacatggttacaatgg |
5982755 |
T |
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| Q |
121 |
atatagtcatcccatgggaccacatggttacaatggatatggtcatctcatgggaccggattatggacattatggttcaaggatgccaatgtcaagaccc |
220 |
Q |
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| T |
5982756 |
atatagtcatcccatgggaccacatggttacaatggatatggtcatctcatgggaccggattatggacattatggttcaaggatgccaatgtcaagaccc |
5982855 |
T |
|
| Q |
221 |
aatcccatgatccactacaacagttatgctgacaattatcgctatactatgtagatgaagtatgtcaaagttgttggctacaagaacttactatggttta |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5982856 |
aatcccatgatccactacaacagttatgctgacaattatcgctatactatgtagatgaagtatgtcaaagttgttggctacaagaacttactatggttta |
5982955 |
T |
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| Q |
321 |
cttttcagactat |
333 |
Q |
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||||||||||||| |
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| T |
5982956 |
cttttcagactat |
5982968 |
T |
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