View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21174_low_9 (Length: 324)
Name: NF21174_low_9
Description: NF21174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21174_low_9 |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 50 - 279
Target Start/End: Complemental strand, 29894691 - 29894462
Alignment:
| Q |
50 |
gcgttattagtgcgcatggcggatttcgcgttgatgatgatctattgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgtt |
149 |
Q |
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|||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| | |
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| T |
29894691 |
gcgttattagcgtgcatggcggatttcgcgttgaagaggatctattgaggtgtaatttgacgaaggtgggatcaaagattagggttttccaagacttgct |
29894592 |
T |
|
| Q |
150 |
aacacaactgaatcgaacaagagatataaccggaaggaaggaaagtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgata |
249 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||| |||||||| |||||||| |
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| T |
29894591 |
aacacaagtgaatcgaacaagagatataaccggaagtaaggaaagtatcttgaagatgagatcgtcagggagaaccaccagctttgtcggaatcatgata |
29894492 |
T |
|
| Q |
250 |
gatgcagtcgggtgtcggcgttgaggatga |
279 |
Q |
| |
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||||||||||||||| ||||| |||||||| |
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| T |
29894491 |
gatgcagtcgggtgttggcgtcgaggatga |
29894462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 288
Target Start/End: Original strand, 29477199 - 29477404
Alignment:
| Q |
88 |
gatctattgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaagga |
187 |
Q |
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|||| ||||||||||||||| || ||| || |||||||||||| || ||||||||||||| ||||||| ||| ||||||||||||| | || ||||||| |
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| T |
29477199 |
gatcgattgaggtgtaatttcacaaagctgggatcagagattagggatttccaagacttgctaacacatttgagtcgaacaagagatttgacgggaagga |
29477298 |
T |
|
| Q |
188 |
aggaaagtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgat-----agatgcagtcgggtgtcggcgttgaggatgaaac |
282 |
Q |
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| T |
29477299 |
aggaaagtaactctgcgatgagatcgtcaggaaggaccaccggcgtcaccggagtcatgatcgtggaaacgcagtggggtggcggcgttgaggatgaaac |
29477398 |
T |
|
| Q |
283 |
ctaaat |
288 |
Q |
| |
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| |||| |
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|
| T |
29477399 |
caaaat |
29477404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 29446487 - 29446615
Alignment:
| Q |
87 |
tgatctattgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaagg |
186 |
Q |
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|||||| |||||||||||||||||||||||| ||| || ||| |||||||||| |||| || ||||| ||||||||||||||||| | || |||||| |
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| T |
29446487 |
tgatctgttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaagg |
29446586 |
T |
|
| Q |
187 |
aaggaaagtatcttgacgatgagatcatc |
215 |
Q |
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| T |
29446587 |
aaggaaaaaacctcggcgatgagatcatc |
29446615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 29105989 - 29105894
Alignment:
| Q |
133 |
gttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaaagtatcttgacgatgagatcatcggggagaaccacc |
228 |
Q |
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||||||||||||||| | ||| | || ||||||| |||| ||||||| |||||||||||||| | | |||||||||||||||||||||||||| |
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| T |
29105989 |
gttttccaagacttgctgacagacctaaatcgaagaagaaatataacgggaaggaaggaaagaacttctgcgatgagatcatcggggagaaccacc |
29105894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 29480327 - 29480467
Alignment:
| Q |
93 |
attgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaa |
192 |
Q |
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||||||||||||||| || ||| || ||| || |||| ||||||||||||||| ||||| ||||||||||| ||||| | || |||||||||||| |
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| T |
29480327 |
attgaggtgtaattttacaaagttgggattggaaattagggttttccaagacttacagacacacttgaatcgaacaggagatttgacgggaaggaaggaa |
29480426 |
T |
|
| Q |
193 |
agtatcttgacgatgagatcatcggggagaaccaccagcgt |
233 |
Q |
| |
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|||| || |||||||||||| || || |||||| |||| |
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| T |
29480427 |
agtaactctgtgatgagatcatcaggaaggaccaccggcgt |
29480467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 19638002 - 19638052
Alignment:
| Q |
97 |
aggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttg |
147 |
Q |
| |
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|||||||||||||| || ||| |||||||||| ||||||||||| |||||| |
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| T |
19638002 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttg |
19638052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 232
Target Start/End: Original strand, 29922887 - 29923032
Alignment:
| Q |
87 |
tgatctattgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaagg |
186 |
Q |
| |
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|||||| |||||||| ||||| ||||| ||| |||| ||||| | ||||||||||||| |||||| ||||||||| ||||| | | |||||||| |
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| T |
29922887 |
tgatctcttgaggtgcaatttcacgaatgtgggatcggagatgagtattttccaagacttactaacactcttgaatcgaagaagaggtttcaccggaaga |
29922986 |
T |
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| Q |
187 |
aaggaaagtatcttga-cgatgagatcatcggggagaaccaccagcg |
232 |
Q |
| |
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|||||||||| ||| | |||||||||| ||| |||| | |||||||| |
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| T |
29922987 |
aaggaaagta-cttcagcgatgagatcgtcgaggaggaacaccagcg |
29923032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 14532 - 14755
Alignment:
| Q |
70 |
ggatttcgcgttgatgatgatctattgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaa |
169 |
Q |
| |
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|||||||| ||||| ||||||| ||||||||||||||| || || ||| ||||||| |||| ||||||||||| |||||||||||| |||||||||||| |
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| T |
14532 |
ggatttcgtgttgacgatgatcgattgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaa |
14631 |
T |
|
| Q |
170 |
gagatataaccggaaggaaggaaagtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgat-----agatgcagtcgggtgt |
264 |
Q |
| |
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||||| | || |||||||||||||||| || |||||||||| | || || | |||| |||| |||||||||||| | | ||||| ||||| |
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| T |
14632 |
gagatttcacgggaaggaaggaaagtaactctgcgatgagatcgcccggaaggaacaccggcgtcaccggagtcatgatcgtggaaacgcagtggggtgg |
14731 |
T |
|
| Q |
265 |
cggcgttgaggatgaaacctaaat |
288 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
14732 |
cggcgttgaggatgaaacctaaat |
14755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 23367 - 23590
Alignment:
| Q |
70 |
ggatttcgcgttgatgatgatctattgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaa |
169 |
Q |
| |
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|||||||| ||||| ||||||| ||||||||||||||| || || ||| ||||||| |||| ||||||||||| |||||||||||| |||||||||||| |
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| T |
23367 |
ggatttcgtgttgacgatgatcgattgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaa |
23466 |
T |
|
| Q |
170 |
gagatataaccggaaggaaggaaagtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgat-----agatgcagtcgggtgt |
264 |
Q |
| |
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||||| | || |||||||||||||||| || |||||||||| | || || | |||| |||| |||||||||||| | | ||||| ||||| |
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| T |
23467 |
gagatttcacgggaaggaaggaaagtaactctgcgatgagatcgcccggaaggaacaccggcgtcaccggagtcatgatcgtggaaacgcagtggggtgg |
23566 |
T |
|
| Q |
265 |
cggcgttgaggatgaaacctaaat |
288 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
23567 |
cggcgttgaggatgaaacctaaat |
23590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 4015737 - 4015861
Alignment:
| Q |
97 |
aggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaaagta |
196 |
Q |
| |
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||||| ||||| || |||||| ||| || |||| ||||||||||||||| | ||||| |||||||||||||||||| | || ||||| || ||||||| |
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| T |
4015737 |
aggtgcaatttcacaaaggtggaatcggaaattagggttttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagta |
4015836 |
T |
|
| Q |
197 |
tcttgacgatgagatcatcggggag |
221 |
Q |
| |
|
|| | |||||| || |||||||| |
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|
| T |
4015837 |
cctcaaagatgagttcgtcggggag |
4015861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 10218256 - 10218160
Alignment:
| Q |
100 |
tgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaaagta |
196 |
Q |
| |
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|||||||| || || ||| | ||||| |||| |||||||||||| || | ||||| ||||| | |||||||||| | |||||||| |||||||||| |
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| T |
10218256 |
tgtaatttcacaaaagtgggttcagaaattagggttttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagta |
10218160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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