View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_high_12 (Length: 416)
Name: NF21175_high_12
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 228 - 395
Target Start/End: Original strand, 53841893 - 53842060
Alignment:
| Q |
228 |
tttaacttttaataaatttcacaatcaaacgtgtttttgataataacttcccatctatctccaaatagatatcagttattatcaacttctgtcccactcg |
327 |
Q |
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| T |
53841893 |
tttaacttttaataaatttcacaatcaaacgtgtttttgataataacttcccatctatctccaaatagatatcagttattatcaacttctgtcccactcg |
53841992 |
T |
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| Q |
328 |
ttaatgactaattacctaacaacatttccaaccaaatgtaaatggattaggaagctaaatgtgtaaca |
395 |
Q |
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| T |
53841993 |
ttaatgactaattacctaacaacatttccaaccaaacgtaaatggattaggaagctaaatgtgtaaca |
53842060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 53841816 - 53841906
Alignment:
| Q |
118 |
tacttttcaacatcgtagcaaaatgtatgacctacaaattcctaaacaaatatatttttagagataagtatgatgattttaacttttaata |
208 |
Q |
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| T |
53841816 |
tacttttcaacatcatagcaaaatgtatgacctacaaattcctaaacaaatatatttttagaggtaagtatgatgattttaacttttaata |
53841906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4706414 - 4706340
Alignment:
| Q |
1 |
tgattgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct |
75 |
Q |
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| T |
4706414 |
tgattgtaaagggggagagaaaaagcataattcagtggtttgtcactaaagatatcatgtaccctttttttatct |
4706340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 33762103 - 33762039
Alignment:
| Q |
6 |
gtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatcctttttt |
70 |
Q |
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| T |
33762103 |
gtaaagggggagagaaaaagcataatccagtggtttgtcattaaagatatcatgtaccctttttt |
33762039 |
T |
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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 26393312 - 26393383
Alignment:
| Q |
4 |
ttgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct |
75 |
Q |
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| T |
26393312 |
ttgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatct |
26393383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 21526942 - 21527010
Alignment:
| Q |
7 |
taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct |
75 |
Q |
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| T |
21526942 |
taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatct |
21527010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 36254120 - 36254188
Alignment:
| Q |
7 |
taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
36254120 |
taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatct |
36254188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 1512475 - 1512545
Alignment:
| Q |
5 |
tgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||| |
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| T |
1512475 |
tgtaaagggggagagaaaaagcataatccagtggtttgtcattaaagatattatgtatcctttttttatct |
1512545 |
T |
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