View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21175_high_13 (Length: 415)
Name: NF21175_high_13
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_high_13 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Original strand, 47193314 - 47193701
Alignment:
| Q |
11 |
cacagataaaccgatgatgactagtcaaaacgtaggccggtcgctgctcatcctttgagcattcccatagctctatgcctacaacgtaaatgagcaagga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
47193314 |
cacagataaaccgatgatgactagtcaaaacgtaggccggtcggtgctcatcctttgagcattcccatagctctacgcctacagcgtaaatgagcaagga |
47193413 |
T |
|
| Q |
111 |
actagagtcttttttcctataagcagcctaaagcatggtagaaaggaaaagagccnnnnnnn-cctctgatcccagtttaaattgagttcatacctggtg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47193414 |
actagagtcttttttcctataagcagcctaaagcatggtagaaaggaaaagagccttttttttcctctgatcccagtttaaattgagttcatacctggtg |
47193513 |
T |
|
| Q |
210 |
tagaccgccagggaggaaaggcttggtaaagacatctcatagccagaaccagacatttccctttaccatccccaccactaggagactgggactcgaggca |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47193514 |
tagaccgccagggaggaaaggcttggcaaagacatctcatagccagaaccagacattttcctttaccatccccaccactaggagactgggactcgaggca |
47193613 |
T |
|
| Q |
310 |
taggtaagtattcctttccgctcttgaagtcaataaattgcctatctttcggtgaacaacatctttattttctttgaatttatgttat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47193614 |
taggtaagtattcctttccgctcttgaagtcaataaattgcctatctttcggtgaacaacatctttattttctttgaatttatgttat |
47193701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 4702 - 4748
Alignment:
| Q |
17 |
taaaccgatgatgactagtcaaaacgtaggccggtcgctgctcatcc |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4702 |
taaaccgatgatgactagtcaaaacgtaggccgatcgtcgctcatcc |
4748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University