View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_high_14 (Length: 377)
Name: NF21175_high_14
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 29006670 - 29007020
Alignment:
| Q |
18 |
agaatgacaattgactgcaaaatactccttatgagttttaacattgttgaaattttagaccagtttgttcaaacacacgaccactaaagctgaaagagat |
117 |
Q |
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| T |
29006670 |
agaatgacaattgactgcaaaatactccttatgagttttaacattgttgaaattttagaccagattgttcaaacacacgaccactaaagctgaaagagat |
29006769 |
T |
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| Q |
118 |
atgtatcagtaatcacattatccaaatgctctgatgaaaccatttcaagtacatgccactcagactagcatggaatttttggctaattaaaattataaca |
217 |
Q |
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| T |
29006770 |
atgtatcagtaatcacattatccaaatgctttgatgaaaccatttcaagtacatgccactcagactagcatggaatttttggctaattaaaattataaca |
29006869 |
T |
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| Q |
218 |
tcaattgtaatttgattcaattatttaataagaatggatagctcaaataaacacttctttaaaatgtacttccagaaaagtaatgaactcataacatgag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29006870 |
ccaattgtaatttgattcaattatttaataagaatggatagctcaaataaacacttctttaaaatgtacctccagaaaagtaatgaactcataacatgag |
29006969 |
T |
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| Q |
318 |
aaatctaattgaacaaaaaaggagcaaagagtctacaatcacattctcaaa |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29006970 |
aaatctaattgaacaaaaaaggagcaaagagtctacaatcaaattctcaaa |
29007020 |
T |
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