View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_high_16 (Length: 343)
Name: NF21175_high_16
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 41751890 - 41751572
Alignment:
| Q |
16 |
aggatctattgaagaatataacataattgatattagaaattaacaaggtagatnnnnnnnttgcagttttcaactacaacccagggatgagcaccgttgt |
115 |
Q |
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| T |
41751890 |
aggatctattgaagtatataaccgaattgatattagaaattaacaaggtagataaaaaaattgcagttttcaactacaacccagggatgagcaccgttgt |
41751791 |
T |
|
| Q |
116 |
tcaggtatacaaagatgactatgatcattgcactatcaaagataccatctacacatacttcagagggaactctagtgttactttggacaagcctggggac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41751790 |
tcaggtatacaaagatgactatgatcattgcactatcaaagataccatctacacatacttcagagggaactctagtgttactttggacaagcctggggac |
41751691 |
T |
|
| Q |
216 |
tattatttcttctgctctgttggaaagcgttgtgagacaggccaaaaactttgggttaaagttcaatgatttgatcatttcatcttattaatttatctaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41751690 |
tattatttcttctgctctgttggaaagcgttgtgagacaggccaaaaactttgggttaaagttcaatgatttgatcatttcatcttattaatttatctaa |
41751591 |
T |
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| Q |
316 |
gcttgaaccgttttcatat |
334 |
Q |
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|||||||||||||| |||| |
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| T |
41751590 |
gcttgaaccgttttgatat |
41751572 |
T |
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