View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_high_24 (Length: 270)
Name: NF21175_high_24
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 5390504 - 5390758
Alignment:
| Q |
1 |
tatgaacctaactataaatcaaacctcaaactaaacatattgagaaatgtgagaaacatttgctttctaacactctttttaacactcactatcttatcga |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| | ||||| ||| ||||||||||||| |||||||| |
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| T |
5390504 |
tatgaacctaactatacatcaaacctcaaactaaacatattgagaaatgctagaaacattcgctgtttaacattctctttaacactcactctcttatcg- |
5390602 |
T |
|
| Q |
101 |
gggaactcatgtgaatcataccacttt--gtgatacccaattctaaagtgtgagacccatgtgaatttgatccaataagagagtaaatgttagagatgac |
198 |
Q |
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|||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
5390603 |
gggaactcatgtgaatcacaccactttaggtgatactcaattctaaagtgtgagacccatatgagtttgatccaatgagagagtaaatgttagagatgac |
5390702 |
T |
|
| Q |
199 |
attagaaaaaaggtgctcagatcatacctcaaatatagttagtggattcttttacg |
254 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
5390703 |
attagaaaaaaggtgctcagatcattcctcaaatatagttagtggatacttttacg |
5390758 |
T |
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