View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21175_high_25 (Length: 209)

Name: NF21175_high_25
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21175_high_25
NF21175_high_25
[»] chr1 (3 HSPs)
chr1 (101-192)||(12457241-12457332)
chr1 (1-45)||(12457141-12457185)
chr1 (113-192)||(12473310-12473389)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 12457241 - 12457332
Alignment:
Q  101 tcggaatgcaatctcaaaaggagatcatagctgttcatagagacactgcaactatttcagagtcaacaatatgtttgcttatggatagattt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12457241 tcggaatgcaatctcaaaaggagatcatagctgttcatagagacactgcaactatttcagagtcaacaatatgtttgcttatggatagattt 12457332  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12457141 - 12457185
Alignment:
Q  1 atgtcagccatggtagaagtatggattggggaattagccaagctc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12457141 atgtcagccatggtagaagtatggattggggaattagccaagctc 12457185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 12473310 - 12473389
Alignment:
Q  113 ctcaaaaggagatcatagctgttcatagagacactgcaactatttcagagtcaacaatatgtttgcttatggatagattt 192  Q
    ||||||||||| |||||| || ||| ||||||||| ||||  | || |||||||||||||||||||||||||||||||||    
T  12473310 ctcaaaaggaggtcataggtgctcaaagagacactacaaccttgtctgagtcaacaatatgtttgcttatggatagattt 12473389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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