View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21175_high_3 (Length: 616)
Name: NF21175_high_3
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 310 - 607
Target Start/End: Original strand, 30885518 - 30885815
Alignment:
| Q |
310 |
gggctcaatacatgtgtgctcttttactgtcatggtgcagcatctattggctgctgctgatctctataatcttgacaggctaaaaatgttatgtgaatca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30885518 |
gggctcaatacatgtgtgctcttttactgtcatggtgcagcatctattggctgctgctgatctctataatcttgacaggctaaaaatgttatgtgaatca |
30885617 |
T |
|
| Q |
410 |
aaattgtgcgaagaaatcaatactgagaccgtagccacaacacttgccctggctgagcaacaccattgtccacagctcaagacgatctgtttgaaattta |
509 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30885618 |
aaattgtgtgaagaaatcaatactgagaccgtagccacgacacttgccctggctgagcaacaccattgtccacagctcaagacgatctgtttgaaattta |
30885717 |
T |
|
| Q |
510 |
ttgcaaatccgacaaatttgggaggtgcgtgctattgcatgttattgtttgtacaatgtttctgatgatactgcaggggtttgatttgatagtataat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30885718 |
ttgcaaatccgacaaatttgggaggtgcgtgctattgcatgttattgtttgtacaatgtttctgatgatactgcaggggtttgatttgatagtataat |
30885815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 30884898 - 30885206
Alignment:
| Q |
1 |
ttgtggttttagcccttatgtattggcagtttttaatccggagcgatgtccatgctttggtacttggttttcagcgaattgtatacgaattctaatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30884898 |
ttgtggttttagcccttatgtattggcagtttttaatccggagcgatgtccatgctttggtacttggttttcagcgaattgtatacgaattctaatgaac |
30884997 |
T |
|
| Q |
101 |
caatttatagaagtaccgtgaatggtaccccggagacaattcacgatttctttactgagtgcaatgaattatgtgactatgatatgaacacataaataat |
200 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30884998 |
caattcacagaagtaccgtgaatggtaccccggagacaattcacgatttctctaccgagtgcaatgaattatgtgactatgatatgaacacataaataat |
30885097 |
T |
|
| Q |
201 |
ctgtttgcttttgtttgtgaagcagtcagttgaaactgggtatatatattataaaaataattgtttgtggtagagtaaaatagggtgagttgtctctatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30885098 |
ctgtttgcttttgtttgtgaagcagtcagttgaaactggg--tgtatattataaaaataattgtttgtggtagagtaaaatagggtgagttgtctctatc |
30885195 |
T |
|
| Q |
301 |
aaaataaacgg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
30885196 |
aaaataaacgg |
30885206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University