View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21175_high_8 (Length: 482)

Name: NF21175_high_8
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21175_high_8
NF21175_high_8
[»] chr1 (3 HSPs)
chr1 (212-468)||(41697788-41698044)
chr1 (212-468)||(41703382-41703638)
chr1 (212-357)||(8017230-8017375)
[»] chr4 (1 HSPs)
chr4 (212-468)||(54078906-54079162)
[»] chr5 (4 HSPs)
chr5 (341-468)||(23556177-23556304)
chr5 (212-357)||(23556019-23556165)
chr5 (216-357)||(9842489-9842630)
chr5 (342-432)||(9842386-9842476)
[»] chr7 (2 HSPs)
chr7 (212-357)||(42434818-42434963)
chr7 (342-439)||(42434708-42434805)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 212 - 468
Target Start/End: Original strand, 41697788 - 41698044
Alignment:
Q  212 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacatta 311  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  41697788 gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatta 41697887  T
Q  312 aaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcacc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41697888 aaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcacc 41697987  T
Q  412 gttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41697988 gttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg 41698044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 212 - 468
Target Start/End: Original strand, 41703382 - 41703638
Alignment:
Q  212 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacatta 311  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  41703382 gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatta 41703481  T
Q  312 aaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcacc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703482 aaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcacc 41703581  T
Q  412 gttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703582 gttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg 41703638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 212 - 357
Target Start/End: Original strand, 8017230 - 8017375
Alignment:
Q  212 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacatta 311  Q
    |||| |||||||||||| |||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||    
T  8017230 gtgcaatatggtgcgacgagcaccacacgaattgcacgagagaatggcggaccccaccatccaatttcctttttatattatttttttgatattaacatta 8017329  T
Q  312 aaatgaataaataaacaaatatatggcagagacaatcacggcacac 357  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||    
T  8017330 aaatgaataaataaataagtatatggaagagacaatcacggcacac 8017375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 212 - 468
Target Start/End: Complemental strand, 54079162 - 54078906
Alignment:
Q  212 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacatta 311  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  54079162 gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatta 54079063  T
Q  312 aaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcacc 411  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54079062 aaatgaataaataaacaaatatatggcagagacaatcacgacacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcacc 54078963  T
Q  412 gttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54078962 gttaccaacattcaccgccgttttcaaacttccttctccataaccttgttgtctctg 54078906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 341 - 468
Target Start/End: Original strand, 23556177 - 23556304
Alignment:
Q  341 agacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaaac 440  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||     
T  23556177 agacaatcacggcacaaacttccttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccaccgtttttaaaa 23556276  T
Q  441 ttccttctccataaccttgttgtctctg 468  Q
    ||||||||||||||||||||||||||||    
T  23556277 ttccttctccataaccttgttgtctctg 23556304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 212 - 357
Target Start/End: Original strand, 23556019 - 23556165
Alignment:
Q  212 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta-nnnnnnngatattaacatt 310  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  23556019 gtgctatatggtgcgacaagcaccacacgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttttatattaacatt 23556118  T
Q  311 aaaatgaataaataaacaaatatatggcagagacaatcacggcacac 357  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  23556119 aaaatgaataaataaacaaatatatggaagagacaatcatggcacac 23556165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 216 - 357
Target Start/End: Complemental strand, 9842630 - 9842489
Alignment:
Q  216 tatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacattaaaat 315  Q
    |||||||||| ||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||    
T  9842630 tatatggtgcaacaagcaccacatgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgataataacattaaaat 9842531  T
Q  316 gaataaataaacaaatatatggcagagacaatcacggcacac 357  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  9842530 gaataaataaataaatatatggaagagacaatcacggcacac 9842489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 342 - 432
Target Start/End: Complemental strand, 9842476 - 9842386
Alignment:
Q  342 gacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgt 432  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9842476 gacaatcactgcacaaacttccttctccataaccttatgttctgattttgttcaacaacacaaactcacagttaccaacattcaccgccgt 9842386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 212 - 357
Target Start/End: Complemental strand, 42434963 - 42434818
Alignment:
Q  212 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacatta 311  Q
    |||||||||| ||||||||||  | |||||||| |||||||||||| ||||||  || ||||||||||||||||||||||       |||||||||||||    
T  42434963 gtgctatatgatgcgacaagcaccgcacgaattgcacgagagaatgactgaccaaactatccaatttcctttttatattatttttttgatattaacatta 42434864  T
Q  312 aaatgaataaataaacaaatatatggcagagacaatcacggcacac 357  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||    
T  42434863 aaatgaataaataaataaatatattgaagagacaatcacggcacac 42434818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 342 - 439
Target Start/End: Complemental strand, 42434805 - 42434708
Alignment:
Q  342 gacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaaa 439  Q
    ||||||||| ||||| ||||  ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42434805 gacaatcactgcacaaacttctttctccataacattatgttctaattttgttcaacaacacaaactcaccattaccaacattcaccgccgttttcaaa 42434708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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