View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_11 (Length: 432)
Name: NF21175_low_11
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 45648927 - 45648512
Alignment:
| Q |
1 |
ttgtaaatgctaaaactcaagaaggattgtatgtgaggttgcacctcaaatcaatcaaacttaagaacagtaccgctaatacaaagattattcttaagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648927 |
ttgtaaatgctaaaactcaagaaggattgtatgtgaggttgcacctcaaatcaatcaaacttaagaacagtaccgctaatacaaagattattcttaagca |
45648828 |
T |
|
| Q |
101 |
caattacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacagttaaaagagaaaaatt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648827 |
cagttacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacagttaaaagagaaaaatt |
45648728 |
T |
|
| Q |
201 |
aacaaccgaaaatgatcaacaaccagatcataccaaactgccattatcgtctgcttaaagtgaaagagacttcacctcatctactttccaaaatccttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45648727 |
aacaaccgaaaatgatcaacaaccagatcataccaaaccgccattatcgtctgcttaaagtgcaagagacttcacctcatctactttccaaaatccttcc |
45648628 |
T |
|
| Q |
301 |
tcgtacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaattcgcgcaatcgagaag |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648627 |
tcgtacttgtaccacctaattatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaattcgcgcaatcgagaag |
45648528 |
T |
|
| Q |
401 |
ccttttggcgaatagt |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
45648527 |
ccttttggcgaatagt |
45648512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 88 - 416
Target Start/End: Complemental strand, 45643810 - 45643493
Alignment:
| Q |
88 |
ttattcttaagcacaattacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacagtta |
187 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45643810 |
ttattcttatgcacagttacaagatttaacaaactccttttaaagggcacaacaacaccaatttgtaatcattcaaatttgttatttgaatctacaatta |
45643711 |
T |
|
| Q |
188 |
aaagagaaaaattaacaaccgaaaatgatcaacaaccagatcataccaaactgccattatcgtctgcttaaagtgaaagagacttcacctcatctacttt |
287 |
Q |
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||||| |||| |||||||||||||||| |||||||||||||| || |||| ||||||||| |||| ||||||||||||||||||| |||| |
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| T |
45643710 |
aaaga-aaaacttaacaaccgaaaatgttcaacaaccagatc----------gcagttattgtctgcttagagtgcaagagacttcacctcatcttcttt |
45643622 |
T |
|
| Q |
288 |
ccaaaatccttcctcgtacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaattcg |
387 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45643621 |
ccaaaatccttcctcatacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatacacgagtcatccatgcatgtgataaattcg |
45643522 |
T |
|
| Q |
388 |
cgcaatcgagaagccttttggcgaatagt |
416 |
Q |
| |
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||||||||||||||||| ||||| ||||| |
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|
| T |
45643521 |
cgcaatcgagaagccttctggcggatagt |
45643493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45644033 - 45643949
Alignment:
| Q |
1 |
ttgtaaatgctaaaactcaagaaggattgtatgtg-aggttgcacctcaaatcaatcaaacttaagaacagtaccgctaatacaa |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |||| || ||||||||| |
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| T |
45644033 |
ttgtaaatgctaaaactcaagaaggattgtatgtgaaggtagcacctcaaatcaatcaaacttgagagcagtgccactaatacaa |
45643949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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