View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_16 (Length: 357)
Name: NF21175_low_16
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 36068062 - 36067737
Alignment:
| Q |
19 |
ttaacactaatctgtgttgcagtaaaaagcgaggaaaatgaagtacaatcatttaaaatattttttcacgttcttgctcctgtcatgatttgctcggttg |
118 |
Q |
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| T |
36068062 |
ttaacactaatctgtgttgcagtaaaaagcgaggaaaatgaagtacaatcatttaaaatattttttcacgttcttgctcctgtcatgatttgctcggttg |
36067963 |
T |
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| Q |
119 |
cgggtttctttttcgtgtattatctgagacgtaggagagcgaggaagaatctcatgtaccacagagaaaattgtaatgtggaactaaaaagaatttccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36067962 |
cgggtttctttttcgtgtattatctgagacgtaggagagcgaggaagaatctcatgtaccacagagaaaattgtaatgtggaactaaaaagaatttccat |
36067863 |
T |
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| Q |
219 |
ttgtgatatattttaatgttgtaaactttcagttactgaatcaaannnnnnnattttatacttctatggtatagttggggaagagattacatcagaagtg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36067862 |
ttgtgatatattttaatgttgtaaactttcagttactgaatcaaatttttttattttatacttctatggtatagttggggaagagattacatcagaagtg |
36067763 |
T |
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| Q |
319 |
aactctctgcaatttgatttcgatat |
344 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36067762 |
aactctctgcaatttgatttcgatat |
36067737 |
T |
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