View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21175_low_17 (Length: 349)
Name: NF21175_low_17
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 5576522 - 5576205
Alignment:
| Q |
16 |
tatactgattgaatctataagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576522 |
tatactgattgaatctataagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctc |
5576423 |
T |
|
| Q |
116 |
agcttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576422 |
agcttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcg |
5576323 |
T |
|
| Q |
216 |
tatcgagacaagcataactacggtataaattgatcaaagagccttttcatttatttgattgttcatcattatcttcaattagttattagtagatgacttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576322 |
tatcgagacaagcataactacggtataaattgatcaaagagccttttcatttatttgattgttcatcattatcttcaattagttattagtagatgacttg |
5576223 |
T |
|
| Q |
316 |
tgtatttttgttacattg |
333 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
5576222 |
tgtatttttgtcacattg |
5576205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 34 - 282
Target Start/End: Complemental strand, 5586925 - 5586670
Alignment:
| Q |
34 |
aagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctcagcttcttggttttgaga |
133 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||| |||| ||||||||||||||| ||||||| |
|
|
| T |
5586925 |
aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttattttgattgtagctcagcttcttggctttgaga |
5586826 |
T |
|
| Q |
134 |
aattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagacaagcataac |
233 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||| | |
|
|
| T |
5586825 |
acttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactacgcatctggcgcagctggaattcgtaccgagacaagcatggc |
5586726 |
T |
|
| Q |
234 |
tacggt----ataaatt---gatcaaagagccttttcatttatttgattgttcatc |
282 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
5586725 |
taaggtttacataaattagaaatcaaagagccttttcatttctttgattgttcatc |
5586670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 5582674 - 5582463
Alignment:
| Q |
33 |
taagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttcttttt-attgcagctcagcttcttggttttga |
131 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
5582674 |
taagtgtttttcattgttcttttctcttcttat-ttaagcttttgattcagctcaaactataaagttattttttattgcagctcagcttcttg-ttttga |
5582577 |
T |
|
| Q |
132 |
gaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagacaagcata |
231 |
Q |
| |
|
||| ||||||| ||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
5582576 |
gaacttcattctaccatttgcaaacattagtggttcagacatactctaaggtgtgaactatgcatctcgtggagctggaattcgtgtcgagacaagcatg |
5582477 |
T |
|
| Q |
232 |
actacggtataaat |
245 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
5582476 |
actatggcataaat |
5582463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 5593158 - 5592970
Alignment:
| Q |
34 |
aagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctcagcttcttggttttgaga |
133 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||| |||||||||||||| ||||| | || ||||| |||||||||||| | ||||||||||||| |
|
|
| T |
5593158 |
aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagcttaaactatgaacttctt---attgcagctcagttacttggttttgaga |
5593062 |
T |
|
| Q |
134 |
aattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgtatcgagaca |
225 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
5593061 |
aattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcatctggcggagctggaattcgtatggagaca |
5592970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 5573363 - 5573233
Alignment:
| Q |
95 |
aagttctttttattgcagctcagcttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgc |
194 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
5573363 |
aagtccttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgc |
5573264 |
T |
|
| Q |
195 |
atctggtgcagctggaattcgtatcgagaca |
225 |
Q |
| |
|
|||||| | ||||||||||||||| |||||| |
|
|
| T |
5573263 |
atctggcggagctggaattcgtatggagaca |
5573233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 5558911 - 5558827
Alignment:
| Q |
131 |
agaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcg |
215 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558911 |
agaaattcatcccaccctttgcaaacactattggttcagatatacttaaaggtgttaactatgcatctggtgcagctggaattcg |
5558827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 12059437 - 12059558
Alignment:
| Q |
106 |
attgcagctcagcttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcag |
205 |
Q |
| |
|
||||||||||| ||| |||| ||| |||||||||||||| | |||||||||| |||||||||||||||||||| || ||| ||||||||||| | | || |
|
|
| T |
12059437 |
attgcagctcaccttgttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcagagatgtgaactatgcatcagagggag |
12059536 |
T |
|
| Q |
206 |
ctggaattcgtatcgagacaag |
227 |
Q |
| |
|
| |||||| ||||||||||||| |
|
|
| T |
12059537 |
caggaatttgtatcgagacaag |
12059558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 12064819 - 12064931
Alignment:
| Q |
118 |
cttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgta |
217 |
Q |
| |
|
|||||||| ||| |||||||||||||| | |||||||||| ||||||||||||||||||||||| ||| || |||||||| | | ||| |||||| ||| |
|
|
| T |
12064819 |
cttcttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcaaagatgtgaaatatgcatccgagggagcgggaatttgta |
12064918 |
T |
|
| Q |
218 |
tcgagacaagcat |
230 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
12064919 |
tcgagataagcat |
12064931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 12052030 - 12052147
Alignment:
| Q |
118 |
cttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgta |
217 |
Q |
| |
|
|||||||| ||| ||| |||||||||| | |||||||||| |||||||| ||| || ||||||||||| || ||||||| || | ||| |||||||||| |
|
|
| T |
12052030 |
cttcttggattttagatattcattccatcatttgcaaacactaatggtttagatattctcaaaggtgtgaattatgcatatgagggagcaggaattcgta |
12052129 |
T |
|
| Q |
218 |
tcgagacaagcataacta |
235 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
12052130 |
tcgagacaagcatgacta |
12052147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 5582421 - 5582338
Alignment:
| Q |
248 |
atcaaagagcctt-ttcatttatttgattgttcatcattatcttcaattagttattagtagatgacttgtgtatttttgttaca |
330 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| |||||||| |||| | ||||||||||||| |
|
|
| T |
5582421 |
atcaaagagccttcttcatttctttgattgttcatctttatctgcaattagtttttagtagaggactagaatatttttgttaca |
5582338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 5568572 - 5568486
Alignment:
| Q |
131 |
agaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcatctggtgcagctggaattcgta |
217 |
Q |
| |
|
|||| ||||| ||||| |||||||||| || ||| |||| |||||| ||||||||||||||||||||| || | ||||||| ||||| |
|
|
| T |
5568572 |
agaatttcatcccaccatttgcaaacaatattggctcaggcatacttaaaggtgttaactatgcatctagttcggctggaagtcgta |
5568486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 7017137 - 7017100
Alignment:
| Q |
178 |
aaaggtgttaactatgcatctggtgcagctggaattcg |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7017137 |
aaaggtgttaactatgcatctggctcagctggaattcg |
7017100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University