View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_19 (Length: 331)
Name: NF21175_low_19
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4314618 - 4314306
Alignment:
| Q |
1 |
acaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtc |
100 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4314618 |
acaacccgaagtaaaaaagttgcttgtatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaaatc |
4314519 |
T |
|
| Q |
101 |
atgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctttagcagcaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4314518 |
atgcatgcctttctccaaaagaatacactgagaatatggatcttcaaataattggcaaagagattgctagaaaatgtaagggattgcctttagcagcaca |
4314419 |
T |
|
| Q |
201 |
atcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagca |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4314418 |
atcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaatatcattccagca |
4314319 |
T |
|
| Q |
301 |
ctccgaattagtt |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
4314318 |
ctccgaattagtt |
4314306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 4305756 - 4305444
Alignment:
| Q |
1 |
acaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtc |
100 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | |
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| T |
4305756 |
acaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtctgtgtttgaaaacc |
4305657 |
T |
|
| Q |
101 |
atgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctttagcagcaca |
200 |
Q |
| |
|
||||||||||||||| |||| | | || |||||| ||||| ||||||| |||||||||||||||| |||||||||| | ||||| |||||||||||||| |
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|
| T |
4305656 |
atgcatgcctttctctaaaacactccattgagaaaatggaactccaaaaaattggcaaagagattattagaaaatgtcaaggattgcctttagcagcaca |
4305557 |
T |
|
| Q |
201 |
atcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagca |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| || || ||||||||||||| ||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
4305556 |
atcacttgggggcttattgcgaagtaaacgtgacatcaaggattgcaataatatactaactagtaacatttgggaaactgagagtaagattattcctgca |
4305457 |
T |
|
| Q |
301 |
ctccgaattagtt |
313 |
Q |
| |
|
|||| ||| |||| |
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|
| T |
4305456 |
ctccaaatcagtt |
4305444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 4253880 - 4254169
Alignment:
| Q |
14 |
aaaaagttgcttctatggtacaaacttttcaaggttact-ctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgccttt |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | ||||||| |||| |||||||||||||||||||| ||||||| || ||||||||||||| |
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|
| T |
4253880 |
aaaaagttgcttctatggtccaaacttttcaaggttaattctcttgatgaattatctgatgaagattgttggtcggtgtttgcaaaccatgcatgccttt |
4253979 |
T |
|
| Q |
113 |
ctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctttagcagcacaatcacttggggg |
212 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||| |
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|
| T |
4253980 |
ctccagaagaaaccactgagaacatggatctccaaaaaattggcaaagagattgttagaaaatgtaagggattgcctttagcagcacagtcatttggggg |
4254079 |
T |
|
| Q |
213 |
cttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcact |
302 |
Q |
| |
|
|||||||||| ||||| | ||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4254080 |
cttgttgcgacgtaaatgtgacataagggactggaataatatactcaatagtaacatctgggaaaatgagagtaagatcattccagcact |
4254169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 4246764 - 4247061
Alignment:
| Q |
16 |
aaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctc |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| | |
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| T |
4246764 |
aaagttgcttctatggtccaaacttttcaaggttattctcttgagaaattgtctgatgaagattgttggtcagtgtttgcaatccatgcatgcctttcac |
4246863 |
T |
|
| Q |
116 |
caaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctttagcagcacaatcacttgggggctt |
215 |
Q |
| |
|
| || ||| ||| ||||| | ||||||||||| || ||| | |||||||| |||||||||||||||||| || ||||||||| |||||||||| ||| | |
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|
| T |
4246864 |
ccgaacaatccaccgagaagacggatctccaaaaaactggtagagagattgttagaaaatgtaagggattgccattagcagcaaaatcacttggaggcct |
4246963 |
T |
|
| Q |
216 |
gttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagtt |
313 |
Q |
| |
|
|||||||||| || ||||||| ||| ||||||||| ||||| |||||||||||||||||| | |||||||||||||||||||| | ||||||||| |
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|
| T |
4246964 |
tttgcgaagtacacatgacatcagtgattggaataatctactacatagtaacatttgggaaactcagagtaagatcattccagcattgagaattagtt |
4247061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 41933322 - 41933623
Alignment:
| Q |
12 |
taaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||| || ||| |
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|
| T |
41933322 |
taaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgaagaagattgttggtccgtgtttgcaaaccatgcctgtctt |
41933421 |
T |
|
| Q |
112 |
tctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctttagcagcacaatcacttgggg |
211 |
Q |
| |
|
||||| |||||| | |||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
41933422 |
cctccagaagaatcctttgagaaaatggatctccaaaaaattggcaaagagattgttagaaaatgtcagggattgcctttagcagcacaatcacttgggg |
41933521 |
T |
|
| Q |
212 |
gcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattag |
311 |
Q |
| |
|
||||||||||||||||||| || |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41933522 |
gcttgttgcgaagtaaacgtaacctcaaggactgggatgatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaatcag |
41933621 |
T |
|
| Q |
312 |
tt |
313 |
Q |
| |
|
|| |
|
|
| T |
41933622 |
tt |
41933623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 34802681 - 34802382
Alignment:
| Q |
14 |
aaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttc |
113 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||| |||| |||| || ||||||||||||||||||||||||||| || | || |||||||| ||||| |
|
|
| T |
34802681 |
aaaatgttgctactatggtccaaacttttcaaccttaccatcttaagatattgtctgatgaagattgttggtcagttttcgcaaaccatgcatgtctttc |
34802582 |
T |
|
| Q |
114 |
tccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgctagaaaatgtaagggattacctttagcagcacaatcacttgggggc |
213 |
Q |
| |
|
|||| || ||| |||||||||||||| |||||| | | ||| ||||||| ||||||||| |||||| | |||||||||||||||||||| ||||| |
|
|
| T |
34802581 |
tccagaaaaatcttctgagaatatggatatccaaaaatacgccaaggagattgttagaaaatgcaagggactgcctttagcagcacaatcactcgggggt |
34802482 |
T |
|
| Q |
214 |
ttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatttgggaaaatgagagtaagatcattccagcactccgaattagtt |
313 |
Q |
| |
|
||||||||| ||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||| |
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|
| T |
34802481 |
ttgttgcgaggtaaacgtgacatcagggattggaataatatactaaataataacatttgggaaaatgagtgtaagatcattccggcactatgaattagtt |
34802382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 6059901 - 6059842
Alignment:
| Q |
150 |
aattggcaaagagattgctagaaaatgtaagggattacctttagcagcacaatcacttgg |
209 |
Q |
| |
|
||||||| |||||||| || ||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
6059901 |
aattggccgagagattgttaaaaagtgcaagggattgcctttagcagcacaatcacttgg |
6059842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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