View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_2 (Length: 646)
Name: NF21175_low_2
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 632
Target Start/End: Complemental strand, 10011978 - 10011371
Alignment:
| Q |
16 |
atggctccaaataatttaaatttcgaaatcagctcttccctccttaattaattgaatgaagtgtcttggaatgacaaaactctaagccttcccactcaga |
115 |
Q |
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| T |
10011978 |
atggctccaaataatttaaatttcgaaatcagctcttccctccttaattaattgaatgaagtatcttggaatgacaaaactctaagccttcccactcaga |
10011879 |
T |
|
| Q |
116 |
atttatttcggtatattttccatgcacctaggtacactatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagcaaacactcaat |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
10011878 |
atttatttcggtatattttccatgcacctagatacactatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacaatcaat |
10011779 |
T |
|
| Q |
216 |
acattcaaaaaccgtttatattctccatggctcacatataaaccttcagacgtt--tttcttaccacaattaataatgtaccttggtgtactatatggaa |
313 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10011778 |
acatccaaaaaccatttatattctccatggctcacatatagaccttcagacgttgctttcttaccacaattaataat-taccttggtgtactatatggaa |
10011680 |
T |
|
| Q |
314 |
aacatgcaactgatctatttcccacgtatgttcacacactaaaccagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactatagga |
413 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
10011679 |
aacatgcagctgatctatttcccacgcatgttcacacactaaaccagcatctatcataactttttttattctagctcttcttcccatgctaactttagga |
10011580 |
T |
|
| Q |
414 |
atcacagtgctctcttcccttggttcaacaacacagcatccatccaactcttcaacgccatctccatagctgcatgttctccgccagaatccttcatcaa |
513 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
10011579 |
atcacagtgctctcttcccttggttcaacagcacagtatccatccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttca---- |
10011484 |
T |
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| Q |
514 |
ccttcttcaacaacgaaatttacgacatgttttggatcgattcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttg |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10011483 |
------tcaacaacgaaatttacgacatgttttggatcgattcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttg |
10011390 |
T |
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| Q |
614 |
tccaaatccaagctctgtg |
632 |
Q |
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| T |
10011389 |
tccaaatccaagctctgtg |
10011371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 39076201 - 39076149
Alignment:
| Q |
100 |
agccttcccactcagaatttatttcggtatattttccatgcacctaggtacac |
152 |
Q |
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| T |
39076201 |
agccttctcactcagaatttatgttggtttgttttccatgcacctaggtacac |
39076149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 13761887 - 13761938
Alignment:
| Q |
100 |
agccttcccactcagaatttatttcggtatattttccatgcacctaggtaca |
151 |
Q |
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| T |
13761887 |
agccttcccactcagaatttatattggtcggttttccatgcacctaggtaca |
13761938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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