View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_21 (Length: 299)
Name: NF21175_low_21
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 25813514 - 25813244
Alignment:
| Q |
12 |
cagagaaaatagaaggctccatggcaactgaggtagcagaaggaagatcagaactaaagctcgccatgctagtgcgctcgataaagctctggctttgctt |
111 |
Q |
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| T |
25813514 |
cagagaaaatagaaggctccatggcaactgaggtagcagaaggaagatcagaactaaagctcgccatgctagtgcgctcgataaagctctggctttgctt |
25813415 |
T |
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| Q |
112 |
tgagaaggcatctactctgaattgcggtgagccaataacatttgaattggtaagatcagaatgatagcaccagagtggctggtttgcattctgatgcatc |
211 |
Q |
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| T |
25813414 |
tgagaaggcatctactctgaattggagtgagccaataacatttcaattggtaagatcagaatgatagcaccagagtggctagtttgcgttctgatgcatc |
25813315 |
T |
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| Q |
212 |
tgcattgtggtcggagattgtatcgatgacccgaaaaagtttttaaggttagtaggattcactcttgcaag |
282 |
Q |
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| T |
25813314 |
tgcattgtggtcggagattgtatcgatgacccgaaaaagttttcaaggttagtaggattcactcttgcaag |
25813244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 25819179 - 25818915
Alignment:
| Q |
12 |
cagagaaaatagaaggctccatggcaactgaggtagcagaaggaagatcagaactaaagctcgccatgctagtgcgctcgataaagctctggctttgctt |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||| || |||| |||||||| || ||||| ||| ||| |||||||| ||||| |||| |
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| T |
25819179 |
cagagaaagtagaaggctccatggcaactgaggtag--gaatcaa----agaattaaagctcaccctgctattgcactcaataaagctatggctccgctt |
25819086 |
T |
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| Q |
112 |
tgagaaggcatctactctgaattgcggtgagccaataacatttgaattggtaagatcagaatgatagcaccagagtggctggtttgcattctgatgcatc |
211 |
Q |
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| T |
25819085 |
cgaaaaggcatcaaccctgaattgtggcgatccactcacattggaattggaaagattagaaggatatccccaaagttgctggtttgcgttctgatgcacc |
25818986 |
T |
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| Q |
212 |
tgcattgtggtcggagattgtatcgatgacccgaaaaagtttttaaggttagtaggattcactcttgcaag |
282 |
Q |
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| T |
25818985 |
tgcattgaggtcggagaatgtaacactgacccgaaaaagttttcaaggttagtaggattcactcctgcaag |
25818915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 25816575 - 25816498
Alignment:
| Q |
198 |
cattctgatgcatctgcattgtggtcggagattgtatcgatgacccgaaaaagtttttaaggttagtaggattcactc |
275 |
Q |
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| T |
25816575 |
cattctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactc |
25816498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 25822346 - 25822289
Alignment:
| Q |
226 |
agattgtatcgatgacccgaaaaagtttttaaggttagtaggattcactcttgcaagt |
283 |
Q |
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| T |
25822346 |
agattgtatcgatgacccaaaaatgtcttcatggttagtaggattcactcctgcaagt |
25822289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 25822561 - 25822473
Alignment:
| Q |
35 |
gcaactgaggtagcagaaggaagatcagaactaaagctcgccatgctagtgcgctcgataaagctctggctttgctttgagaaggcatc |
123 |
Q |
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| T |
25822561 |
gcaactgaggtagcagaaggaagcttggaattaaagcttgccacgctgctgcactcgaaaaagctctggctccgatttgaaaaggcatc |
25822473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 33648709 - 33648449
Alignment:
| Q |
22 |
agaaggctccatggcaactgaggtagcagaaggaagatcagaactaaagctcgccatgctagtgcgctcgataaagctctggctttgctttgagaaggca |
121 |
Q |
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|||||| ||||||||||||||| ||||||||||||| || ||| |||| ||||||||||| ||| ||| |||||||| ||||| |||| || |||||| |
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| T |
33648709 |
agaaggttccatggcaactgagctagcagaaggaagctcggaattaaatctcgccatgctgctgcactcaataaagctttggctacgcttcgaaaaggca |
33648610 |
T |
|
| Q |
122 |
tctactctgaattgcggtgagccaataacatttgaattggtaagatcagaatgatagcaccagagtggctggtttgcattctgatgcatctgcattgtgg |
221 |
Q |
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| T |
33648609 |
tcaactctaaattgtgatgatccaatcacgtttgaattggtaagatcaaaaggattgccccaaagttgctggtttgtgctctgatgcacctgtattgatg |
33648510 |
T |
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| Q |
222 |
tcggagattgtatcgatgacccgaaaaagtttttaaggttagtaggattcactcttgcaag |
282 |
Q |
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||||||||||||| |||||||| |||| ||||| |||||||||||||||||||| |||||| |
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| T |
33648509 |
tcggagattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaag |
33648449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 36224509 - 36224659
Alignment:
| Q |
12 |
cagagaaaatagaaggctccatggcaactgaggtagcagaaggaagatcagaactaaagctcgccatgctagtgcgctcgataaagctctggctttgctt |
111 |
Q |
| |
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||||||| ||||||| ||||||||||||||| ||||||||||||| || ||| ||| ||| || | | | ||||||| |||||||| || || |||| |
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| T |
36224509 |
cagagaaggtagaaggttccatggcaactgagctagcagaaggaagctcggaattaaggcttgcaacgttgctgcgctcaataaagctttgtctccgctt |
36224608 |
T |
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| Q |
112 |
tgagaaggcatctactctgaattgcggtgagccaataacatttgaattggtaaga |
166 |
Q |
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||| |||||||| |||| || | ||| ||||| |||||||||||||||||| |
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| T |
36224609 |
tgaaaaggcatcaactc----ctgtgatgatccaatcacatttgaattggtaaga |
36224659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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