View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_24 (Length: 272)
Name: NF21175_low_24
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 31565421 - 31565679
Alignment:
| Q |
1 |
gacaacaagctgcataaactaaagataagccccgactaaatctatcagtttcgtaaggacgagttagacccaatacnnnnnnnttaataattatcattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31565421 |
gacaacaagctgcataaactaaagataagccccgactaaatctatcagtttcgtaaggacgagttagacccaatacaaaaaaattaataattatcattat |
31565520 |
T |
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| Q |
101 |
ggtcttctcattatgataaaacatatgaactacnnnnnnnn---ctaatgacaaggtgaggagggtataccttaattgaatgatctagtaacaatgaaca |
197 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31565521 |
ggtcttttcattatgataaaacatatgaactacaaaaaaaaaaactaatgacaaggtgaggagggtataccttaattgaatgatctagtaacaatgaaca |
31565620 |
T |
|
| Q |
198 |
ttggaatttcaccttgtgagagggtagatatacagacaagacctgtaaagtgtgtgatt |
256 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31565621 |
ttggaatttcaccttgtgagagggtagatataaagacaagacctgtaaagtgtgtgatt |
31565679 |
T |
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