View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_25 (Length: 272)
Name: NF21175_low_25
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 40078240 - 40078480
Alignment:
| Q |
15 |
aatatcatatgatttataattgtcatgtgcactctgtatctagctgtataataagaatcttgatagccattcttctcctgaaacaagagaaacgcctggg |
114 |
Q |
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| T |
40078240 |
aatatcatatgatttataattgtcatgtgcactatgtatctagctgtataataagaatcttgatagccattcttctcctgaaacaagagaaacgcctggg |
40078339 |
T |
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| Q |
115 |
caaccatgggcaagaggctgggatgatataaagaaatattgttcggggacggaaaggcccccatgctggtttataataagcttgggtatcaatgatattg |
214 |
Q |
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| T |
40078340 |
caaccatgggcaagaggctgggatgatataaagaaatatttttcggggacggaaaggcccccatgctggtttataataagcttgggtatcaatgatattg |
40078439 |
T |
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| Q |
215 |
tctttgtaacaataaattgaatttttgtataccatctttgt |
255 |
Q |
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| T |
40078440 |
tctttgtaacaataaattgaatttttgtataccatctttgt |
40078480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 40072978 - 40073149
Alignment:
| Q |
67 |
aagaatcttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggcaagaggctgggatgatataaagaaatattgttcggggacgg |
166 |
Q |
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| T |
40072978 |
aagaatcttgatagccattcttctcctgaaacaagagctacacctgggaaaccatgggtaagaggctgggatgatatacagaaat----ttcgggg---- |
40073069 |
T |
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| Q |
167 |
aaaggcccccatgctggtttataataagcttgggtatcaatgatattgtctttgtaacaataaattgaatttttgtataccat |
249 |
Q |
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| T |
40073070 |
--aggccccagtgctgg-gaatcagtagcttgggtataaatgatactatctttgtaacaataaattgaattcgtgtataccat |
40073149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 44971781 - 44971858
Alignment:
| Q |
73 |
cttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggcaagaggctgggatgatataaagaaa |
150 |
Q |
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| T |
44971781 |
cttgacagccattctgctcctgaaactagagcaacacttggccagccatgggtaagaggttgggatgatattaagaaa |
44971858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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