View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21175_low_29 (Length: 201)
Name: NF21175_low_29
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 45336750 - 45336567
Alignment:
| Q |
11 |
tgagatgaagtcaacacttgaatttgcaaatagatggtgatgatggtcataaggaacatggattagagaaagctgcattaatttcctacaatagagccaa |
110 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45336750 |
tgagaagaagtcaacacttgaatt-gcaaatagatggtgatgatggtcataaggaacatggattagagaaagctgcattaatttcctacaatagagccaa |
45336652 |
T |
|
| Q |
111 |
gtatgttgtgattgatgaaaggaagaattcagtgagaaggttagattacatgaagatagaaccaaaagtagaagcaaatgagttt |
195 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
45336651 |
gtatgttgttattgatgaaaggaagaattcagtgagaaggttagattacatgaagatagaactaaaagtagaagaaaatgagttt |
45336567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 6184963 - 6184877
Alignment:
| Q |
98 |
acaatagagccaagtatgttgtgattgatgaaaggaagaattcagtgagaaggttagattacatgaagatagaaccaaaagtagaag |
184 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||| |||||| |
|
|
| T |
6184963 |
acaatagagccaagcatgttgtgattgatgaaaggaggaactcagtgagaaggttagagtctatgaagatggaaccaaaaatagaag |
6184877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 6185060 - 6185011
Alignment:
| Q |
34 |
ttgcaaatagatggtgatgatggtcataaggaacatggattagagaaagc |
83 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
6185060 |
ttgcaagtagatggtgatgatgttcacaaggaacatgaattagagaaagc |
6185011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University