View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21175_low_5 (Length: 512)
Name: NF21175_low_5
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_5 |
 | |
|
| [»] scaffold0153 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Original strand, 1170577 - 1171075
Alignment:
| Q |
11 |
cacagaccggtagtagcatatttcagcataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1170577 |
cacagaccggtagtagcatatttcagcataaaactgctagacggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcct |
1170676 |
T |
|
| Q |
111 |
ctatctctactcgaagaaccaacaacaaaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgta |
210 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
1170677 |
ctatctctactcgaagaacgagcaacaaaatttgttaaccaaaaaaatattatgcatgaatataaacaatgttcagaatcaaatataatgtttctgcgta |
1170776 |
T |
|
| Q |
211 |
tagctaata----------------aatactattgtaaagtatctgaagatcatactacatctatatgaaacctatctaaagttaacttctaacacaagt |
294 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1170777 |
tagctaataaatactattgtaaataaatactattgtaaagtatctgaagatcatattacatctatatgaaacctatctaaagttaacttctaacacaagt |
1170876 |
T |
|
| Q |
295 |
cagttgttaatgtgacctaattcttattaaagggaggtacaataactataggatctgtaactctatacacttcttcaacatatcgaaacctcttgttctt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1170877 |
cagttgttaatgtgacctaattcttattaaagggaggtacaataactataggatctgtaactctatacacttcttcaacatatcgaaacctcttgttctt |
1170976 |
T |
|
| Q |
395 |
cctccttaaccgttcatcttcttcaatttctgccaacacatcctcaactgaatctgtaggtgatgatggtgaaatatcatcactatccttactctgttg |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1170977 |
cctccttaaccgttcatcttcttcaatttctgccaacacatcctcaactgaatctgtgggtgatgatggtgaaatatcatcactatccttactccgttg |
1171075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 1164532 - 1164562
Alignment:
| Q |
15 |
gaccggtagtagcatatttcagcataaaact |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1164532 |
gaccggtagtagcatatttcagcataaaact |
1164562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 32720 - 32890
Alignment:
| Q |
38 |
ataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctctatctctactcgaagaaccaacaaca |
137 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||| || ||||| |
|
|
| T |
32720 |
ataaaactactagacggtagacacaattttattatccacttatattcaatgacaccctaaacaatttggtcctctatctctaatgaaagaatcatcaaca |
32819 |
T |
|
| Q |
138 |
aaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagcta |
216 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
32820 |
aaatttgttaacc--------aatatgcatgaatataagcaatgttcagaatcaaatataatgtttttgcgtatagcta |
32890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 18033 - 18099
Alignment:
| Q |
158 |
tattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaatac |
224 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
18033 |
tattatgcatgaatataagcaatgttcagaatcaaatataatgtttcagcttatagctagtaaatac |
18099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 17963 - 17999
Alignment:
| Q |
75 |
acttatattcaatgataacctaaacaatttggtcctc |
111 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| |
|
|
| T |
17963 |
acttatatttaaagataacctaaacaatttggtcctc |
17999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 25994820 - 25995015
Alignment:
| Q |
27 |
catatttcagcataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctctatctctactcgaag |
126 |
Q |
| |
|
||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
25994820 |
catattttagcataaaactactagccggtgtacacaattttattatccacttatatttaaagataacctaaataatttggtcctctatctctacttgaag |
25994919 |
T |
|
| Q |
127 |
aaccaacaacaaaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaatac |
224 |
Q |
| |
|
|| || |||| ||||||||||||| |||||||||||||||| | | |||||||||| |||| ||||||||| | |||||||| ||||||| |
|
|
| T |
25994920 |
aatcagcaac-aaatttgttaacc-aaaaaatattatgcatgaatattagcactgttcagaatcaaatctaatgtttcagtttatagctagtaaatac |
25995015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 26094284 - 26094478
Alignment:
| Q |
24 |
tagcatatttcagcataaaactgct-agatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctctatctctactc |
122 |
Q |
| |
|
|||||||||| ||||||||||| || ||| ||| |||||||||||||| | ||||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
26094284 |
tagcatattttagcataaaactacttagacggtgtacacaattttattagc-----atatttaaagataacctaaataatttggtcctctatctctactt |
26094378 |
T |
|
| Q |
123 |
gaagaaccaacaacaaaatttgttaaccnnnnnnntattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaat |
222 |
Q |
| |
|
|||||| || |||| ||||||||||||| |||||||||| ||||||| |||||||||||| |||| ||||||||| || |||| ||| ||||| |
|
|
| T |
26094379 |
gaagaatcagcaac-aaatttgttaacc-aaaaaatattatgcattaatataagcaatgttcagaatcaaatctaatgtttcagcttatatctagtaaat |
26094476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 25553654 - 25553741
Alignment:
| Q |
24 |
tagcatatttcagcataaaactgctagatggtagacacaattttattatccacttatattcaatgataacctaaacaatttggtcctc |
111 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||| |||||||||||||||||| ||||||| || ||||||||||| |||||||||||| |
|
|
| T |
25553654 |
tagcatattttagcataaaactactagacggtgtacacaattttattatccatttatatttaaagataacctaaataatttggtcctc |
25553741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 25553748 - 25553814
Alignment:
| Q |
158 |
tattatgcatgaatataaataatgttcagaattaaatataatgtttctgcgtatagctaataaatac |
224 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| ||||||||| || |||||||| ||||||| |
|
|
| T |
25553748 |
tattatgcatgaatataagcaatgttcagaatcaaatctaatgtttcagcttatagctagtaaatac |
25553814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University