View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_6 (Length: 504)
Name: NF21175_low_6
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 488
Target Start/End: Complemental strand, 33077517 - 33077047
Alignment:
| Q |
21 |
gttgggtaaagagcagaattcaaaagtcatctctaacaaaagaaggaatgtcattccactaagtaaagccccacacattaaaagtataatcaacaagctt |
120 |
Q |
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| T |
33077517 |
gttgggtaaagagcagaattcaaaagtcatctctaacaaaagaaagaatgtcattccactaagtaaagccccacacattaaaagtataatcaagaagctt |
33077418 |
T |
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| Q |
121 |
gtatgcacaatgattttcttccccgttgataggagacacaatcaaagagaaatcattaacaatatttaacaatggagccaatggtttctcaattgtgaag |
220 |
Q |
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| T |
33077417 |
gtatgcacaatgattttcttccccgttgataggagacacaatcaaagagaaatcattgataatatttaacaatggagccaatggtttctcaattgtgaag |
33077318 |
T |
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| Q |
221 |
gaactttgtgaggagagttgaatgttgaaacaatcaactgtgaaggaactttatggatatttaaattctaaacatgtgtttggaaaacactaaaattata |
320 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
33077317 |
gaactttgtgaggagagatgaatgttgaaacaatcaactctgaaggaactttatggatatttaaatgctaaacatgtgtttggaaaacactaaaattaca |
33077218 |
T |
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| Q |
321 |
gtggactaaaagttgtatattaaatattctaaaaattacgattgaagagttggaatcagctacgtagatcaaacaactatataa---cacatcgagtttt |
417 |
Q |
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| T |
33077217 |
gtggactaaaatttgtatattaaatattctaaaaattatgattgaagagttggaatcagctacgtagatcaaacaacgatataatacaacatcgagtttt |
33077118 |
T |
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| Q |
418 |
tagttttatagagcaaacaaaataaagcatgcctaatttatatatacatgttcagttgactatcaattctt |
488 |
Q |
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| T |
33077117 |
tagttttatagagcaaacaaaataaagcatgccaaatttttatacaaatgttcatttgactatcaattctt |
33077047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 271 - 396
Target Start/End: Complemental strand, 33069118 - 33068989
Alignment:
| Q |
271 |
ttatggatatttaaattctaaacatgtgtttggaaaacactaaaattatagtggactaaaagttgtatattaaatattctaaaaattacgattgaagagt |
370 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
33069118 |
ttatggatatttaaatgctaaacatgtgtttggaaaacactaatattatagtggactaaaagttatatattaaatattcaaaaaattacgattgaagaga |
33069019 |
T |
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| Q |
371 |
tggaatcag----ctacgtagatcaaacaa |
396 |
Q |
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| T |
33069018 |
tggaatcaatcatctacgtagatcaaacaa |
33068989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 173
Target Start/End: Original strand, 10744363 - 10744494
Alignment:
| Q |
42 |
aaaagtcatctctaacaaaagaaggaatgtcattccactaagtaaagccccacacattaaaagtataatcaacaagcttgtatgcacaatgattttcttc |
141 |
Q |
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||||||||||| ||| ||||||||||||||||||||||| || || | | ||| ||||||||| || |||||||| | ||||||||| || |||| |
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| T |
10744363 |
aaaagtcatctttaataaaagaaggaatgtcattccactgagcaatgacttgcactcgaaaagtatagtctacaagcttatccgcacaatgagttccttc |
10744462 |
T |
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| Q |
142 |
cccgttgataggagacacaatcaaagagaaat |
173 |
Q |
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| | |||| |||||||||| |||||||||| |
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| T |
10744463 |
ctaatagatatgagacacaataaaagagaaat |
10744494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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