View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_7 (Length: 484)
Name: NF21175_low_7
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 108 - 414
Target Start/End: Complemental strand, 26843178 - 26842872
Alignment:
| Q |
108 |
aaaaggtataacaaaaaacatgtcaaaatcaataagttgaaagtatatatgtatcgtagagaatctcatctaacataacttgagcaaattttttaacatc |
207 |
Q |
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| T |
26843178 |
aaaagttataacaaaaaacatgtcaaaatcaataagttgaaagtatatatgtatcgtagagaatctcatctaacataacttgagcaaattttttaacatc |
26843079 |
T |
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| Q |
208 |
tagatcaggtattttgatctacttgtattcagacatacatatatatgcttctccaaatctgccgtatagaaacatacaagagtatttggcaagaacatgc |
307 |
Q |
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| T |
26843078 |
tagaacaggtattttgatctacttttattcagacatacatatatatgcttcttcaaatctgccgtatagaaacaaataagagtatttggcaagaacatgc |
26842979 |
T |
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| Q |
308 |
acccaattagtgacagtaaattgttctacaaataaaataagtgctttcagaatagtagttcaagggcgtatatatgatacattcaatacataaacatgta |
407 |
Q |
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| T |
26842978 |
acccaattagtgacagtaaattgttctacaaataaaataagtgctttcagaatagtagttcaagggcgtatatatgatactttcaatacataaacatata |
26842879 |
T |
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| Q |
408 |
catgtaa |
414 |
Q |
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| T |
26842878 |
catgtaa |
26842872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 406 - 470
Target Start/End: Complemental strand, 26842697 - 26842633
Alignment:
| Q |
406 |
tacatgtaaataatccactcatgcatataagagatttagttcaatttgcactatatagtcacttt |
470 |
Q |
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| T |
26842697 |
tacatgtaagtaatccactcatgcatataagagatttagttcaatttgcactatatagtcacttt |
26842633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 26843381 - 26843324
Alignment:
| Q |
53 |
ccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatctggtcctaaa |
110 |
Q |
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| T |
26843381 |
ccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatccggtcctaaa |
26843324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 8180910 - 8180969
Alignment:
| Q |
51 |
atccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatctggtcctaaa |
110 |
Q |
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| T |
8180910 |
atccgaagcatggtctgcagatcaagaaatcagccagaaaatatagaatccggtcctaaa |
8180969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 27536960 - 27536992
Alignment:
| Q |
14 |
tggacttaatttgaagtggggaccggaacctga |
46 |
Q |
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| T |
27536960 |
tggacttaatttgaagtggggacaggaacctga |
27536992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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