View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21175_low_9 (Length: 464)
Name: NF21175_low_9
Description: NF21175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21175_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Original strand, 7450948 - 7451402
Alignment:
| Q |
12 |
aagaatatggcataaaagagat-tatcaaataatcatatggtcagtgccgtcaattgcacatcacataataactgtttgttgagtagccgctatttgaga |
110 |
Q |
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| T |
7450948 |
aagaaaatggcataaaagagatgtatcaaataatcatatggtcagtgccgtcaattgcacatcacagaataactgtttgttgagtagccgctatttgata |
7451047 |
T |
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| Q |
111 |
acactttctatgaagaatagcagtttattatatatctaagtagtttatcacaatttctgcaacctctcaaactttgtgcatcgtatgcagtgttgtcaaa |
210 |
Q |
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| T |
7451048 |
acactttctatgaagaatagcagtttattatatatctaagtagtttatcacaatttctgcaacctctcaaactttgtgcatcgtatgcagtgttgtcaaa |
7451147 |
T |
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| Q |
211 |
tagtaggtatagtggtgctatagagctacagcatctcctataat-gagatttcttcttatagaatctgaaatctagatttttcaaaatataaaagcattg |
309 |
Q |
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| T |
7451148 |
tagtaggtatagtggtgctatagagctacagcatctcctgtaatggagatttcttcttatagaatctgaaatctagatttttcaaaatataaaagcattg |
7451247 |
T |
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| Q |
310 |
cagaagctgaaataattatggatagccagtaagtacagttgtcgatgaatgagattactggaaatactatatgtatacttcatttattaccatctatccc |
409 |
Q |
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| T |
7451248 |
cagaagctgaaataattatggattgccagtaagtacagttgtcgatgaatgagattactggaaatactatatgtatacttcattcattaccatctatccc |
7451347 |
T |
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| Q |
410 |
aaggaattaatctcattcatcaattgtttatcaaaggccaagttgatagcagaca |
464 |
Q |
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| T |
7451348 |
aaggaattaatctcattcatcaattgtttatcaaaggccaagttgaatgcagaca |
7451402 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 40991005 - 40991037
Alignment:
| Q |
201 |
tgttgtcaaatagtaggtatagtggtgctatag |
233 |
Q |
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| T |
40991005 |
tgttgtcaaatagtgggtatagtggtgctatag |
40991037 |
T |
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