View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_high_12 (Length: 373)
Name: NF21176_high_12
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 357
Target Start/End: Original strand, 38196374 - 38196729
Alignment:
| Q |
3 |
atcattctcgtaattgttctca-aatgtggactgcaatctgtgcactccaaagaaacacttttacccgttgcggaaatctaagcttccacattttctccc |
101 |
Q |
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| T |
38196374 |
atcattctcgtaattgttctcacaatgtggacagcaatctgtgcactccaaagaaacacttttacccgctgcggaaatctaagcttccacattttctccc |
38196473 |
T |
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| Q |
102 |
actcccctggtactcggtactcttcattatcaattagagtctctatagcatatcgatatgctgatttcacagtataattacctctattattaaatttcca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38196474 |
actcccctggtactcggtactcttcattatcaattagagtctccatagcatatcgatatgctgatttcacagtataattacctctattattaaatttcca |
38196573 |
T |
|
| Q |
202 |
aataagcttgtcttcctctgtagccattgtgattgtgagcttgcaaatctcccctttgtctctttcattgaacataccatctatcaatccccaattccat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38196574 |
aataagcttgtcttcctctgtagccattgtgattgtgagcttgcaaatctcccctttgtctctttcattgaacataccatctatcaatccccaattccat |
38196673 |
T |
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| Q |
302 |
ccttgcctgttctgttccatcaaatcagccactctaaagtgttctgttccagctac |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38196674 |
ccttgcctgttctgttccatcaaatcagccactctaaagtgttctgttccagctac |
38196729 |
T |
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