View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_high_13 (Length: 362)
Name: NF21176_high_13
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 35383677 - 35383344
Alignment:
| Q |
11 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttcctatat |
110 |
Q |
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| T |
35383677 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttcctatat |
35383578 |
T |
|
| Q |
111 |
ataataaaatcagttacatcatttaatgagtctaccaaatagatcatcaaaccagatagtttcattgcaaaagaattcataaacaacaagttgaagaaaa |
210 |
Q |
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| T |
35383577 |
ataataaaatcagttacatcatttaatgagtctaccaaatagatcatcaaaccagatagtttcattgaaaaagaattcataaacaacaagttgaagaaaa |
35383478 |
T |
|
| Q |
211 |
aagcagataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35383477 |
aagcagataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgc |
35383378 |
T |
|
| Q |
311 |
tttgcatctaacccttcagcaagcccagcatagt |
344 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35383377 |
tttgcatctaacccttcagcaagcccagcatagt |
35383344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 344
Target Start/End: Original strand, 35363432 - 35363559
Alignment:
| Q |
217 |
ataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgctttgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||| ||||||||| |||| |||||| |||||||||| | |
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| T |
35363432 |
ataccatggagtaattaatgcaacaacaccaataggctccttgagaacatagcttttgaaggtattcataggaagagatataggagctttttgctttgta |
35363531 |
T |
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| Q |
317 |
tctaacccttcagcaagcccagcatagt |
344 |
Q |
| |
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|| || ||||||||||| |||||||||| |
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| T |
35363532 |
tccaatccttcagcaagtccagcatagt |
35363559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 35363271 - 35363367
Alignment:
| Q |
11 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttccta |
107 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
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| T |
35363271 |
cacagatgccaattcagacggcttcaagattgcagcacaaccagcagccagagctggagcaattttccttgccgccattgagagaggatagttccta |
35363367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 44177672 - 44177571
Alignment:
| Q |
217 |
ataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgctttgca |
316 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| |||||||| ||| | || |||||||| ||||| || || |||||||||||||||||| |
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| T |
44177672 |
ataccatggagttattaatccaacaacaccaataggctccttaagaacatgactcctgaatgtatccattggaagagacaccggagccttttgctttgca |
44177573 |
T |
|
| Q |
317 |
tc |
318 |
Q |
| |
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|| |
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|
| T |
44177572 |
tc |
44177571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 44178166 - 44178073
Alignment:
| Q |
14 |
agatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttccta |
107 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| ||||| || ||||| || | ||||||||||||| |
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| T |
44178166 |
agatgccaattcagatggcttcaatatcgcagcacaaccagcagcaagagcaggagcaaccttccacgtagccatcaacataggatagttccta |
44178073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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