View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21176_high_14 (Length: 351)

Name: NF21176_high_14
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21176_high_14
NF21176_high_14
[»] chr1 (4 HSPs)
chr1 (23-337)||(34989364-34989678)
chr1 (23-266)||(34975529-34975772)
chr1 (29-337)||(2305490-2305798)
chr1 (23-265)||(34980309-34980551)
[»] chr3 (14 HSPs)
chr3 (23-337)||(22657071-22657385)
chr3 (54-337)||(22620919-22621202)
chr3 (214-335)||(22648191-22648312)
chr3 (159-319)||(22615291-22615451)
chr3 (121-326)||(21930666-21930871)
chr3 (159-330)||(22115368-22115539)
chr3 (186-337)||(22431178-22431329)
chr3 (33-192)||(22648309-22648467)
chr3 (186-337)||(22367932-22368083)
chr3 (212-330)||(30989317-30989435)
chr3 (159-335)||(22458496-22458672)
chr3 (159-335)||(22481477-22481653)
chr3 (212-330)||(22034853-22034971)
chr3 (186-295)||(22630485-22630594)
[»] scaffold1439 (2 HSPs)
scaffold1439 (171-265)||(1714-1808)
scaffold1439 (249-337)||(1598-1686)
[»] chr5 (2 HSPs)
chr5 (221-337)||(40580333-40580449)
chr5 (192-275)||(40580244-40580327)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 337
Target Start/End: Original strand, 34989364 - 34989678
Alignment:
Q  23 cacagagtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggagaaaaacctcataaaggaatcactgaa 122  Q
    ||||| |||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  34989364 cacagtgtcacaatcaaacaacactgaagtattgtcgagacacatgttggagaagctttacggacaaaaaggagaaaaacctcctaaaggaatcactgaa 34989463  T
Q  123 atggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatg 222  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34989464 atggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatg 34989563  T
Q  223 agattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttat 322  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  34989564 agattgaatatgttgtgagtgataataaaaatggtagtaagatatttattaccacaagaaataaggatgttgccatgtattgtaagaaatcttcatttat 34989663  T
Q  323 tgaagtgcatgaact 337  Q
    |||||||||||||||    
T  34989664 tgaagtgcatgaact 34989678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 34975529 - 34975772
Alignment:
Q  23 cacagagtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggagaaaaacctcataaaggaatcactgaa 122  Q
    ||||| |||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  34975529 cacagtgtcacaatcacacaacactgaagtattgtcgagacacatgttggagaagctttacggacaaaaaggagaaaaacctcctaaaggaatcactgaa 34975628  T
Q  123 atggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatg 222  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34975629 atggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatg 34975728  T
Q  223 agattgaatatgatgtgagtgatgataaaaatggtagtaagata 266  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  34975729 agattgaatatgttgtgagtgataataaaaatggtagtaagata 34975772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 29 - 337
Target Start/End: Complemental strand, 2305798 - 2305490
Alignment:
Q  29 gtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggat 128  Q
    ||||||||||||||| |  ||||| ||| |||||  ||||||| |||||||| |||||||||||| ||||   |  | |||||  |||  ||||||||||    
T  2305798 gtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacgaacaaaaagtagaatttctacctaaagatatctatgaaatggat 2305699  T
Q  129 cgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattg 228  Q
    ||||||| |||||||| |||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  2305698 cgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttttgtgtttgataatgtatggaacacaagtttttgggatgagattg 2305599  T
Q  229 aatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagt 328  Q
    |||||| | |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||| ||||    
T  2305598 aatatgctatgagtgatcataaaaatggtagtaagatatttattaccacaagaaatatggatgttgccatatattgtaagaaatcttcttttattcaagt 2305499  T
Q  329 gcatgaact 337  Q
    |||||||||    
T  2305498 gcatgaact 2305490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 34980309 - 34980551
Alignment:
Q  23 cacagagtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggagaaaaacctcataaaggaatcactgaa 122  Q
    ||||| ||||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||| | |||  |||||||||    
T  34980309 cacagtgtcacaatcatacaatattgaagtattgctgagacgcatgttgaagaagctttacgaacaaaaaggagaacatcctcttgaagatatcactgaa 34980408  T
Q  123 atggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatg 222  Q
    |||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34980409 atggatcgagatgcattgatttatgagttgagaaattacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatg 34980508  T
Q  223 agattgaatatgatgtgagtgatgataaaaatggtagtaagat 265  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  34980509 agattgaatatgttgtgagtgataataaaaatggtagtaagat 34980551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 337
Target Start/End: Complemental strand, 22657385 - 22657071
Alignment:
Q  23 cacagagtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggagaaaaacctcataaaggaatcactgaa 122  Q
    ||||| ||||||||| ||||| |  ||||| ||| |||||| ||||||| || |||||||| ||||||||||||| || |||| | |||  |||||||||    
T  22657385 cacagtgtcacaatcttacaatatagaagtgttgttgagacgcatgttgaaggagctttacaaacaaaaaggagacaatcctcctcaagatatcactgaa 22657286  T
Q  123 atggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatg 222  Q
    ||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  22657285 atggatcgaggcgcattgatttctgagctgagaaaatacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacaaaagtttttgggatg 22657186  T
Q  223 agattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttat 322  Q
    |||||||||||| |||  ||||| |||||||||| ||||||||||||||||| | |||||||| |||||||||  ||||||||||||||||||| |||||    
T  22657185 agattgaatatgctgttggtgatcataaaaatgggagtaagatatttattacaacaagaaatatggatgttgcggtgtattgtaagaaatcttcttttat 22657086  T
Q  323 tgaagtgcatgaact 337  Q
    |||||||||||||||    
T  22657085 tgaagtgcatgaact 22657071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 337
Target Start/End: Complemental strand, 22621202 - 22620919
Alignment:
Q  54 ttgctgagacacatgttggagaagctttacgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggatcgaggtgcattgatttctgagttga 153  Q
    ||||||||| |||||||| || || ||||| |||||||||||||  | |||  | |||  ||| |||||||||||| |||  ||||||||||| ||||||    
T  22621202 ttgctgagatacatgttgaaggagatttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttga 22621103  T
Q  154 taaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaa 253  Q
     |||  |||||||  ||||||||||| ||||||| |||||||||||||||| || |  ||||||| |||| || ||  ||| ||||| |||| |||||||    
T  22621102 gaaaccacttgcaacaaaagaggtatgtttttgtatttgatgatgtatggaccatagatttttggaatgaaatagagcatgttgtgattgataataaaaa 22621003  T
Q  254 tggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaact 337  Q
    ||| ||||||||||| ||||| | ||||| || ||||||||| || |||||||| |||||||| |||||||| |||||||||||    
T  22621002 tgggagtaagatattgattacaacaagaagtatggatgttgctatttattgtaaaaaatcttcttttattgaggtgcatgaact 22620919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 214 - 335
Target Start/End: Complemental strand, 22648312 - 22648191
Alignment:
Q  214 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatc 313  Q
    ||||||||||||||||| |||   ||| |||| |||||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||    
T  22648312 tttgggatgagattgaaaatgcattgattgataataaaaatgggagtaagatatttattacaacaagaaatatggatgttgccatatattgtaagaaatc 22648213  T
Q  314 ttcgtttattgaagtgcatgaa 335  Q
    ||| || ||||||||| |||||    
T  22648212 ttctttcattgaagtgtatgaa 22648191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 159 - 319
Target Start/End: Complemental strand, 22615451 - 22615291
Alignment:
Q  159 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 258  Q
    ||||||||| ||||||||||  || ||||||||||||||||||||||||    ||||||| |||||||||||| || ||| | |||| |||||||||| |    
T  22615451 tacttgcagcaaaagaggtacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaa 22615352  T
Q  259 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtt 319  Q
    ||||||||||||| || | ||| ||||  ||||||||  | | |||||||| |||||||||    
T  22615351 gtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgtt 22615291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 326
Target Start/End: Original strand, 21930666 - 21930871
Alignment:
Q  121 aaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttggga 220  Q
    |||||||||||||  |||||| | ||||  ||| ||| | ||||||||||||||||||| || | |||||||||||||| |||||   |  |||||||||    
T  21930666 aaatggatcgaggatcattgactgctgaagtgagaaaatgcttgcagaaaaagaggtatgttgtcgtgtttgatgatgtttggaatgtacatttttggga 21930765  T
Q  221 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttt 320  Q
    ||| ||||||| || ||  | ||||  ||||||||| |||||||||||||| || | ||| || | ||||||||   ||| |||||| |||||||| ||     
T  21930766 tgatattgaatttgctgcaattgatagtaaaaatggaagtaagatatttataacaacaaggaacatggatgttgtggtgtcttgtaaaaaatcttctttc 21930865  T
Q  321 attgaa 326  Q
    ||||||    
T  21930866 attgaa 21930871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 330
Target Start/End: Original strand, 22115368 - 22115539
Alignment:
Q  159 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 258  Q
    ||||||||||||||||||||  || | |||||||||||||| |||||   |  |||||||||||| ||||||| |  ||| | ||||  ||||||||| |    
T  22115368 tacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaa 22115467  T
Q  259 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgc 330  Q
    ||||||||||||| || | |||||| | ||||||||   ||| |||||| |||||||| || ||||| ||||    
T  22115468 gtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaatcttctttcattgaggtgc 22115539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 337
Target Start/End: Complemental strand, 22431329 - 22431178
Alignment:
Q  186 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 285  Q
    |||||||||||||||||| |  ||| ||||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
T  22431329 gtgtttgatgatgtatgggagtcaaatttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22431230  T
Q  286 aggatgttg-ccatgtattgtaagaaatcttcgtttattgaagtgcatgaact 337  Q
    |||||| ||   |||  ||||||||||||||| ||| ||||||||||||||||    
T  22431229 aggatggtgtagatg-cttgtaagaaatcttcttttgttgaagtgcatgaact 22431178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 22648467 - 22648309
Alignment:
Q  33 caatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggatcgag 132  Q
    ||||||||| | || ||||  |||||||||  ||||||| |  |||||||| |||||||||||||| | |||| |||||| ||| |  |||||||| |||    
T  22648467 caatcatactatacagaagggttgctgagaggcatgttgaatgagctttacaaacaaaaaggagaagagcctcctaaaggtatctcgaaaatggat-gag 22648369  T
Q  133 gtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttg 192  Q
    |  | |||||||||||| ||| ||| ||||||||  ||||||||||| |||| |||||||    
T  22648368 ggtcgttgatttctgagctgagaaactacttgcaacaaaagaggtatgttttcgtgtttg 22648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 337
Target Start/End: Complemental strand, 22368083 - 22367932
Alignment:
Q  186 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 285  Q
    |||||||||||||||||| || ||  ||||||| |||| ||||||| |  | ||| |||| | ||||||||| |||||||||| || || | ||||||      
T  22368083 gtgtttgatgatgtatgggactcacatttttggaatgatattgaattttctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacg 22367984  T
Q  286 aggatgttgc-catgtattgtaagaaatcttcgtttattgaagtgcatgaact 337  Q
    ||||||||||  |||  ||||||||||||||| ||| ||||||||||| ||||    
T  22367983 aggatgttgcagatg-cttgtaagaaatcttcttttgttgaagtgcataaact 22367932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 30989435 - 30989317
Alignment:
Q  212 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa 311  Q
    |||||||||||| ||||||| || ||| | |||| |||||||||| |||||||||||||| || | ||||||    |||||||   ||| |||||| |||    
T  30989435 tttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttatcacaacaagaaacctagatgttgtgttgtcttgtaaaaaa 30989336  T
Q  312 tcttcgtttattgaagtgc 330  Q
    ||||| | |||||||||||    
T  30989335 tcttcttatattgaagtgc 30989317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 335
Target Start/End: Complemental strand, 22458672 - 22458496
Alignment:
Q  159 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 258  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
T  22458672 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22458573  T
Q  259 gtaagatatttattaccagaagaaataaggatgttgc-catgtattgtaagaaatcttcgtttattgaagtgcatgaa 335  Q
    |||||||||| || || | |||||| | |||||||||  ||| | |||||||||||||| ||| |||||||| |||||    
T  22458572 gtaagatattaatcacaacaagaaacatggatgttgcaaatgca-tgtaagaaatcttcttttgttgaagtgtatgaa 22458496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 335
Target Start/End: Complemental strand, 22481653 - 22481477
Alignment:
Q  159 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 258  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
T  22481653 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22481554  T
Q  259 gtaagatatttattaccagaagaaataaggatgttgc-catgtattgtaagaaatcttcgtttattgaagtgcatgaa 335  Q
    |||||||||| || || | |||||| | |||||||||  ||| | |||||||||||||| ||| |||||||| |||||    
T  22481553 gtaagatattaatcacaacaagaaacatggatgttgcaaatgca-tgtaagaaatcttcttttgttgaagtgtatgaa 22481477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 22034853 - 22034971
Alignment:
Q  212 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa 311  Q
    |||||||||||| ||||||| |  ||| | ||||  ||||||||| |||||||||||||| || | |||||| | ||||||||   ||| |||||| |||    
T  22034853 tttttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaa 22034952  T
Q  312 tcttcgtttattgaagtgc 330  Q
    ||||| || ||||| ||||    
T  22034953 tcttctttcattgaggtgc 22034971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 22630594 - 22630485
Alignment:
Q  186 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 285  Q
    |||||||||||||||||| |  ||   |||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
T  22630594 gtgtttgatgatgtatgggaggcacaattttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22630495  T
Q  286 aggatgttgc 295  Q
    ||||||||||    
T  22630494 aggatgttgc 22630485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 1808 - 1714
Alignment:
Q  171 aagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 265  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  1808 aagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 1714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 1686 - 1598
Alignment:
Q  249 aaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaact 337  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  1686 aaaaatggtagtaagatatttattaccacaagaaatatggatgttgctgtgtattgtaagaaatcttcttttattgaagtgcatgaact 1598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 221 - 337
Target Start/End: Original strand, 40580333 - 40580449
Alignment:
Q  221 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttt 320  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||  ||||| || |||||||||  ||||||||||||||| ||| |||    
T  40580333 tgagattgaatatgctatgagtgataataaaaatggtagtaagatatttattacctcaagaagtatggatgttgcagtgtattgtaagaaattttctttt 40580432  T
Q  321 attgaagtgcatgaact 337  Q
    |||||||||||||||||    
T  40580433 attgaagtgcatgaact 40580449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 40580244 - 40580327
Alignment:
Q  192 gatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattacc 275  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  40580244 gatgatgtatggaacaaaagtttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatttattacc 40580327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University