View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21176_high_16 (Length: 344)

Name: NF21176_high_16
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21176_high_16
NF21176_high_16
[»] chr5 (1 HSPs)
chr5 (19-310)||(34890599-34890890)
[»] chr4 (2 HSPs)
chr4 (27-87)||(54069483-54069543)
chr4 (24-66)||(50681152-50681194)
[»] chr2 (3 HSPs)
chr2 (24-84)||(11201445-11201505)
chr2 (20-78)||(39073748-39073806)
chr2 (25-89)||(41241196-41241260)
[»] chr8 (1 HSPs)
chr8 (20-67)||(29205772-29205819)
[»] chr3 (1 HSPs)
chr3 (24-67)||(20170487-20170530)
[»] chr1 (2 HSPs)
chr1 (20-85)||(836398-836463)
chr1 (22-67)||(15477542-15477587)
[»] chr7 (1 HSPs)
chr7 (19-67)||(420324-420372)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 34890890 - 34890599
Alignment:
Q  19 gaaataacttatagcatatataaatacaatttaacatgattttatctttcaatataaaaacagcttatgtatacctacacaaacgattatcattataatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34890890 gaaataacttatagcatatataaatacaatttaacatgattttatctttcaatataaaaacagcttatgtatacctacacaaacgattatcattataatt 34890791  T
Q  119 gtttgtgctcataagttgtttatcccctaaatatgacatcttctagaagtgttgtaaaactggtatttaaggagtaaaaatatcacgataagtcatcatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34890790 gtttgtgctcataagttgtttatcccctaaatatgacatcttctagaagtgttgtaaaactggtatttaaggagtaaaaatatcacgataagtcatcatc 34890691  T
Q  219 cttatctcggatatatatttcataatttggtcccaagttcgttctagcaattctaaaagacacttgcaattgattgagtatatataaacgaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34890690 cttatctcggatatatatttcataatttggtcccaagttcgttctagcaattctaaaagacacttgcaattgattgagtatatataaacgaa 34890599  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 54069483 - 54069543
Alignment:
Q  27 ttatagcatatataaatacaatttaacatgattttatctttcaatataaaaacagcttatg 87  Q
    |||||||||||| ||| |||||||||||| |||||||||||  ||||||||| ||| ||||    
T  54069483 ttatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatagcatatg 54069543  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 50681152 - 50681194
Alignment:
Q  24 aacttatagcatatataaatacaatttaacatgattttatctt 66  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||    
T  50681152 aacttatagcatatacaaaaacaatttaacattattttatctt 50681194  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 11201445 - 11201505
Alignment:
Q  24 aacttatagcatatataaatacaatttaacatgattttatctttcaatataaaaacagctt 84  Q
    ||||||||| ||||| ||| ||||||| || | ||||||||||| ||||||||||||||||    
T  11201445 aacttatagtatatacaaaaacaattttaccttattttatcttttaatataaaaacagctt 11201505  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39073748 - 39073806
Alignment:
Q  20 aaataacttatagcatatataaatacaatttaacatgattttatctttcaatataaaaa 78  Q
    |||| |||||||||||||| ||| |||||||||| | ||||||||||| ||| ||||||    
T  39073748 aaattacttatagcatatacaaaaacaatttaacgttattttatcttttaatgtaaaaa 39073806  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 41241196 - 41241260
Alignment:
Q  25 acttatagcatatataaatacaatttaacatgattttatctttcaatataaaaacagcttatgta 89  Q
    |||||||||||||| ||| |||||||||| | |||||||||||   |||| ||| ||||||||||    
T  41241196 acttatagcatatacaaaaacaatttaacttcattttatcttttcctatagaaatagcttatgta 41241260  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 29205819 - 29205772
Alignment:
Q  20 aaataacttatagcatatataaatacaatttaacatgattttatcttt 67  Q
    ||||||||||||||||||| ||| |||||||||| | |||||||||||    
T  29205819 aaataacttatagcatatacaaaaacaatttaacttcattttatcttt 29205772  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 20170530 - 20170487
Alignment:
Q  24 aacttatagcatatataaatacaatttaacatgattttatcttt 67  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||    
T  20170530 aacttatagcatatacaaaaacaatttaacattattttatcttt 20170487  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 836398 - 836463
Alignment:
Q  20 aaataacttatagcatatataaatacaatttaacatgattttatctttcaatataaaaacagctta 85  Q
    |||||||||||||| |||| ||| ||||||||   | ||||||||||||| |||||||| ||||||    
T  836398 aaataacttatagcttatacaaaaacaatttagttttattttatctttcactataaaaatagctta 836463  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 15477587 - 15477542
Alignment:
Q  22 ataacttatagcatatataaatacaatttaacatgattttatcttt 67  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||||    
T  15477587 ataacttatagcatatacaaaaacaatttaactttattttatcttt 15477542  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 420372 - 420324
Alignment:
Q  19 gaaataacttatagcatatataaatacaatttaacatgattttatcttt 67  Q
    |||| ||||||||||||||| ||| |||||| ||||| |||||||||||    
T  420372 gaaacaacttatagcatatacaaaaacaattgaacattattttatcttt 420324  T

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