View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_high_3 (Length: 502)
Name: NF21176_high_3
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 40218511 - 40218047
Alignment:
| Q |
19 |
gtatgatcaggccactggtatnnnnnnnttattctaagtttataagctctccatattgctattcttggatggattcccatcatcaaaagaggcaaagaca |
118 |
Q |
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| T |
40218511 |
gtatgatcaggccactggtataaaaaaattattctaagtttataagctctccatattgctattcttggatggattcccatcatcaaaagaggcaaagaca |
40218412 |
T |
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| Q |
119 |
attaaccaaactgaatttgaaaaataatgtagtttggttttttaatactatcatttttattggatatgatttgactttgttttgtgggggaagttatttc |
218 |
Q |
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| T |
40218411 |
a----ccaaa-----tttgaaaaataatgtagtttggttttttaatactatcatttttattggatatgatttgactttgttttgtgggggaagttatttc |
40218321 |
T |
|
| Q |
219 |
gtgtcatttaatttgataaaaaggtgttaccataggaaaagatacgagaacataaacaaatagaaatatgcatgaaaattttacacatgtcctcttcttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
40218320 |
gtgtcatttaatttgataaaaaggtgttaccataggaaaagatacgagaacataaacaaatagaaatatgcatgaaaattttacatatgtcctcttgttc |
40218221 |
T |
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| Q |
319 |
ctattttaaggcattctaatcctctagataatttgttttctataattgacaatcatatgaaacaaatcctctatatttgttccttatcattggttttgaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40218220 |
ctattttaaggcattctaatcctctagataatttgttttctataattgacaatcatatgaaacaaatcctctatatttgttccttatcattggttttgaa |
40218121 |
T |
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| Q |
419 |
gctattggccaacgtggtttactctctatctctacattgcctcaatttgttgcgtagtttcctcatctcctttg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40218120 |
gctattggccaacgtggtttactctctatctctacattgcctcaatttgttgcgtagtttcctcatctcctttg |
40218047 |
T |
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