View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_high_4 (Length: 452)
Name: NF21176_high_4
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 51 - 435
Target Start/End: Complemental strand, 31224459 - 31224067
Alignment:
| Q |
51 |
gataagtcaaacttcatcattctatttaaatttcgaagttaagaagnnnnnnnnnnnn-----gacacaaggtaaggaactcttcatatcaataaaaagt |
145 |
Q |
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| T |
31224459 |
gataagtcaaacttcatcattctatttaaatttcgaagttaagaagtttttttttttttttttgacacaaggtaaggaactcttgatatcaacaaaaagt |
31224360 |
T |
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| Q |
146 |
tgttttaataaatttattgttgattgaaaaagattttgcattaatttgaaaatgtctacattaat----agtacacacctataagtggatggatttgaag |
241 |
Q |
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| T |
31224359 |
tgttttaataaatttattgttgattgaaaa-gatttggcattaatttgaaaatgtctacattaattaatagtacacacctataagtggatggatttgaag |
31224261 |
T |
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| Q |
242 |
gccacatatgaatccaatctgctattggatgagagtaatgtttgatgaaatctctccagcaaaaaacttcatccttggcttgattaagactagttccata |
341 |
Q |
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| T |
31224260 |
gccacatatgaatccaatctgctattggatgagagtaatgtttgatgaaatctctccagcaaaaaacttcatccttggcttgattaagacttgttccata |
31224161 |
T |
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| Q |
342 |
tcttacaggattgtgaacatcatcagaaaataagcgcattttttcatcattagggaggttgaagaattctgttgcaacttgtagagcatctttc |
435 |
Q |
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| T |
31224160 |
tcttacaggtttgtgaacatcatcagaaaataagcgcattttttcatcattagggaggttgaagaattctgttgcaacttgtagagcatctttc |
31224067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 31224598 - 31224563
Alignment:
| Q |
20 |
agatacggacatgacccacgtagacaatagtgataa |
55 |
Q |
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| T |
31224598 |
agatacggacatgacccacgtagacaatagtgataa |
31224563 |
T |
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