View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_high_5 (Length: 442)
Name: NF21176_high_5
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 19777105 - 19776664
Alignment:
| Q |
1 |
tttcaagaacaacccccataggtgcaagctcatccaacactttacaagccctcgcaaccttccccgaaagacacaatccaatcgaaagagccctgaaaca |
100 |
Q |
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| T |
19777105 |
tttcaagaacaacccccataggtgcaagctcatccaacactttgcaagccctcgcaaccttccccgaaagacacaatccaatcgaaagagccctgaaaca |
19777006 |
T |
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| Q |
101 |
ggcaacattcggcgttatccctttgtcaatcatcaaatcccacatcttgaccgcctcttcattcctatgcaccctaaaaagctcactgataagtatagta |
200 |
Q |
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| T |
19777005 |
ggcaacattcggcgttatccctttgtcaatcatcaaatcccacatcttgaccgcctcttcattcctatgcaccctaaaaagctcactgataagtatagta |
19776906 |
T |
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| Q |
201 |
aacgtatacacagtctgctcacacccatcgcgctccatcctctttaccaacgcaatagcatcatctatcctcccacacttacaaagtccatcaatgagcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19776905 |
aacgtatacacagtctgctcacacccatcgcgctccatcctctttaccaacgcaagagcatcatctatcctcccacacttacaaagtccatcaatgagcg |
19776806 |
T |
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| Q |
301 |
cattgtagcaatacgaatccggcggacatcccttctcagccatttcatcaaacaccttctcggcttcatcaactctccccgccttcccaagcccatcaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19776805 |
cattgtagcaatacgaatccggcggacatcccttctcagccatttcatcaaacaccttctcggcttcatcaactctccccgccttcccaagcccatcaat |
19776706 |
T |
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| Q |
401 |
caaactcgaataaaacacagcattaacaacaaccccattctc |
442 |
Q |
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| T |
19776705 |
caaactcgaataaaacacagcattaacaacaacaccattctc |
19776664 |
T |
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