View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21176_high_6 (Length: 436)
Name: NF21176_high_6
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 94 - 281
Target Start/End: Complemental strand, 30344119 - 30343932
Alignment:
| Q |
94 |
taaaccaacgggtgatagtaatgacttaacacactgacaaattgcattgtttaagaacattgctgctttgtcatctattttgtttgtgtgtattgtatag |
193 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30344119 |
taaaccaacgggtgataataatgacttaacacactgacaaattgcattgtttaagaacattgctgctttgtcatctattttgtttgtgtgtattgtatag |
30344020 |
T |
|
| Q |
194 |
tgctttcactttttgattcttttcctgattcctaatgctaaaattaacaaaaacgattcataatgcattttggtccgtttataaactt |
281 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30344019 |
tgcattcactttttgattcttttcctgattcctaatgctaaaattaacaaaaacgattcataatgcattttggtccgtatataaactt |
30343932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 314 - 431
Target Start/End: Complemental strand, 30343902 - 30343785
Alignment:
| Q |
314 |
ctgaaagttgatggtttaaccaagcatttctatacactctttcgcagaagttcacaactatttcttttcaatcatatagtactgaatgtcctgttattgt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30343902 |
ctgaaagttgatggtttaaccaagcatttctatacactctttcgcagaagttcacaactatttcttttcaatcatatagtactgaatgtcctcttattgt |
30343803 |
T |
|
| Q |
414 |
agggaaatctgtgctgct |
431 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
30343802 |
agggaaatcagtgttgct |
30343785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 29221070 - 29221037
Alignment:
| Q |
389 |
atagtactgaatgtcctgttattgtagggaaatc |
422 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
29221070 |
atagtaatgaatgtcctgttattgtagggaaatc |
29221037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University