View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_high_7 (Length: 434)
Name: NF21176_high_7
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 19777352 - 19776936
Alignment:
| Q |
18 |
tcaacaagggtttgaaacttgaccctcattttaacactccgatatcgttcatacccaataccaatcttgctatgcatcaacttgatagccaaatcaacat |
117 |
Q |
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| T |
19777352 |
tcaacaagggtttgaaacttgaccctcattttaacactccgatatcgttcatacccaataccaatcttgctatgcatcaacttgatagccaaatcagcat |
19777253 |
T |
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| Q |
118 |
tcccagctttcctcaaggaatgaatcatcacggtcctaatcttcccaggtatttctctacctctatcaacaattccatcagccaacttacaagcctcctt |
217 |
Q |
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| T |
19777252 |
tcccagctttcctcaaggaatgaatcatcacggtcctaatcttcccaggtatttctctacctctatcaacaattccatcagccaacttacaagcctcctt |
19777153 |
T |
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| Q |
218 |
cacgcgaccagctttacacagcgctccaatcatatcatcataagccgtttcaagaacaacccccataggtgcaagctcatccaacactttacaagccctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19777152 |
cacgcgaccagctttacacagcgctccaatcatatcttcataagccgtttcaagaacaacccccataggtgcaagctcatccaacactttgcaagccctc |
19777053 |
T |
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| Q |
318 |
gcaaccttccccgaaagacacaatccaatcgaaagagccctgaaacaggcaacattcggcgttatccctttgtcaatcatcaaatcccacatcttgaccg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19777052 |
gcaaccttccccgaaagacacaatccaatcgaaagagccctgaaacaggcaacattcggcgttatccctttgtcaatcatcaaatcccacatcttgaccg |
19776953 |
T |
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| Q |
418 |
cctcttcattcctatgc |
434 |
Q |
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| T |
19776952 |
cctcttcattcctatgc |
19776936 |
T |
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