View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21176_low_1 (Length: 700)

Name: NF21176_low_1
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21176_low_1
NF21176_low_1
[»] chr1 (5 HSPs)
chr1 (21-684)||(47158663-47159326)
chr1 (89-238)||(31973462-31973611)
chr1 (49-273)||(34665901-34666125)
chr1 (99-186)||(43834387-43834474)
chr1 (85-170)||(4753119-4753203)
[»] chr7 (4 HSPs)
chr7 (82-186)||(21416320-21416423)
chr7 (82-275)||(27597859-27598053)
chr7 (47-173)||(23568903-23569029)
chr7 (163-238)||(2463112-2463188)
[»] chr4 (8 HSPs)
chr4 (60-275)||(11197080-11197294)
chr4 (137-275)||(10396346-10396484)
chr4 (131-234)||(34946242-34946345)
chr4 (142-235)||(2917270-2917363)
chr4 (99-186)||(47680804-47680891)
chr4 (148-238)||(11307706-11307796)
chr4 (89-186)||(12718008-12718104)
chr4 (82-172)||(11307480-11307570)
[»] chr6 (2 HSPs)
chr6 (89-266)||(7301399-7301576)
chr6 (131-238)||(11637848-11637955)
[»] chr8 (2 HSPs)
chr8 (82-170)||(3671046-3671133)
chr8 (99-238)||(5981569-5981708)
[»] chr3 (5 HSPs)
chr3 (131-207)||(16143362-16143438)
chr3 (143-275)||(32200975-32201107)
chr3 (141-275)||(40195910-40196045)
chr3 (143-186)||(16869693-16869736)
chr3 (144-275)||(43978665-43978796)
[»] chr2 (6 HSPs)
chr2 (137-211)||(11727800-11727874)
chr2 (82-186)||(35414321-35414424)
chr2 (218-275)||(35448705-35448762)
chr2 (132-186)||(44981941-44981996)
chr2 (96-186)||(40053342-40053431)
chr2 (89-237)||(28226540-28226685)
[»] scaffold0548 (1 HSPs)
scaffold0548 (148-238)||(4196-4286)
[»] chr5 (2 HSPs)
chr5 (142-238)||(14168868-14168965)
chr5 (141-203)||(41341389-41341451)


Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 21 - 684
Target Start/End: Complemental strand, 47159326 - 47158663
Alignment:
Q  21 agtgtggtgtctctcttaacaaatcatagacgtttagttcattgccgctcacaacgattctcagacttcccaacaaattggtatcagagtcctgtttagg 120  Q
    ||||||||||||||||||||| ||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47159326 agtgtggtgtctctcttaacagatcctaaacatttagctcattgccgctcacaacgattctcagacttcccaacaaattggtatcagagtcctggttagg 47159227  T
Q  121 ctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||    
T  47159226 ctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattgttggaaattaatcgtaagtga 47159127  T
Q  221 ttatgtctcacatcgactgaaaattgaagaaacgtttgatacataaaagaggagaatgttgaaaatatgtgggtaagaatgtgacgcctttcttttaata 320  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||| ||||||||||    
T  47159126 ttatatctcacatcgactggaaattgaagaaacgtttgatacataaaagaggagaatattggaaatgtatgggtaagaatgtgacgcctctcttttaata 47159027  T
Q  321 aatcctaaacacttagcttgttaccgctcggaacgctcccgacactcctcaacactagtactagtattttcctctagtaaaaagcctccttagaattgca 420  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  47159026 aatcctaaacacttagcttgttaccgctcggagcgctcccgacactcctcaacaccagtactagtattttgctctagtaaaaagcctccttagaattgca 47158927  T
Q  421 aaatatattccaaccgactcaaatcaataaatcaaaagcaaaattggtggtgccacgtgtatttttaagtaacagggagtagttgtgatttaattaatgg 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  47158926 aaatatattccaaccgactcaaatcaataaatcaaaagcaaaattggtggtgccatgtgtatttttaagtaacagggggtagttgtgatttaattaatgg 47158827  T
Q  521 aaagcgttaagtttgttgctttaataattggacatcgtcccaattgaaaacgaacacagtcatgaagaagtacgtgatgtttcaaaatctttcaactgac 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47158826 aaagcgttaagtttgttgctttaataattggacatcgtcccaattgaacacgaacacagtcatgaagaagtacgtgatgtttcaaaatctttcaactgac 47158727  T
Q  621 tcacgataatatttttattttgcctctaaaagaagctagtagtataatatttttccgggttctt 684  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47158726 tcaagataatatttttattttgcctctaaaagaagctagtagtataatatttttccgggttctt 47158663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 31973611 - 31973462
Alignment:
Q  89 cccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaa 188  Q
    |||||||||||||||||| || | || ||||||||||||   ||||| ||| |||||||||||||||||||  |||||||||||  |||||||||||| |    
T  31973611 cccaacaaattggtatcaaagccttggttaggctcgatggaggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttga 31973512  T
Q  189 aaggaagattattggaaattaagcgtaactgattatgtctcacatcgact 238  Q
      || ||||| |||||||| ||| || | ||||||||||||||| |||||    
T  31973511 gggggagattgttggaaatcaagtgtgagtgattatgtctcacaccgact 31973462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 49 - 273
Target Start/End: Complemental strand, 34666125 - 34665901
Alignment:
Q  49 gacgtttagttcattgccgctcacaacgattctcagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcct 148  Q
    |||||||| | ||||||| |||||| |  |||| ||||| ||||||||| |||||||||||||||| ||||||||| || |   ||| ||| ||||||||    
T  34666125 gacgtttactccattgcccctcacagcacttctgagactccccaacaaactggtatcagagtcctggttaggctcgctggggtggtgggagcgggatcct 34666026  T
Q  149 agtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcgactgaaaattgaa 248  Q
    |||||||||||  |||||||||||  | | |||||||| |  |  ||||| |||||||| | | || | ||||||| || ||||||||||  |||||||     
T  34666025 agtgtggatcacactagtgatgtgagtaaatcacacttgagggagagattgttggaaatcatgtgtgagtgattatatcccacatcgactagaaattgag 34665926  T
Q  249 gaaacgtttgatacataaaagagga 273  Q
    |||| ||| |||| |||||| ||||    
T  34665925 gaaatgttagatatataaaatagga 34665901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 43834387 - 43834474
Alignment:
Q  99 tggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 186  Q
    ||||||||||  |||| |||||| ||||| | ||| |  ||||||||||||||||||||||  |||||||||||  ||| ||||||||    
T  43834387 tggtatcagaaccctggttaggcccgatgggggagcggaagtgggatcctagtgtggatcaggctagtgatgtgagtgactcacactt 43834474  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 4753203 - 4753119
Alignment:
Q  85 acttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatg 170  Q
    |||||||||||| | |||||||| |||||| ||||||||  || ||||  | ||||||||||||||| |||||||| ||| |||||    
T  4753203 acttcccaacaact-ggtatcagggtcctgattaggctcagtgggagatcgggagtgggatcctagtatggatcatgctaatgatg 4753119  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 21416423 - 21416320
Alignment:
Q  82 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtca 181  Q
    |||||| ||||||||||||||||||||| |||  ||||||| | || | ||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  21416423 cagactccccaacaaattggtatcagag-cctagttaggcttgctgggggagtgggagcgggatcctagtgtggatcatcctagtgatgtgggtgagtca 21416325  T
Q  182 cactt 186  Q
    |||||    
T  21416324 cactt 21416320  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 27597859 - 27598053
Alignment:
Q  82 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtggg--atcctagtgtggatcatcctagtgatgtggatgagt 179  Q
    |||||| ||||| ||| ||||||||||| |||| ||||||| | || | ||||| ||| |||  | |||||||||||||||||||||||||||| |||||    
T  27597859 cagactccccaataaactggtatcagag-cctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgtgggtgagt 27597957  T
Q  180 cacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcgactgaaaattgaagaaacgtttgatacataaaagaggaga 275  Q
    ||||||| || |  ||||  |||||||| ||| || | |||| ||||||||||||||||  |||||||  ||||||| |||| |||| ||||||||    
T  27597958 cacacttgaaggagagatcgttggaaatcaagtgtgagtgataatgtctcacatcgactataaattgagcaaacgttggatatataagagaggaga 27598053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 23569029 - 23568903
Alignment:
Q  47 tagacgtttagttcattgccgctcacaacgattctcagacttcccaacaaattggtatcagagtcctgtttaggctc-gatgagagagtgtgagtgggat 145  Q
    ||||||||||| |||||||||||  ||| | | | |||||| ||||||||| |||||||| || |||| |||||||  | || | ||||| |||  ||||    
T  23569029 tagacgtttagctcattgccgctaccaatgctccccagactccccaacaaactggtatcatag-cctggttaggctttgctgggggagtgggagcaggat 23568931  T
Q  146 cctagtgtggatcatcctagtgatgtgg 173  Q
    ||||||||||||||||||||||||||||    
T  23568930 cctagtgtggatcatcctagtgatgtgg 23568903  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 2463112 - 2463188
Alignment:
Q  163 tagtgatgtggatgagtcacacttaaaaggaagattattggaaa-ttaagcgtaactgattatgtctcacatcgact 238  Q
    ||||||||||| ||| |||||||| |   ||||||| ||||||| ||||| || | |||||||||||||||||||||    
T  2463112 tagtgatgtgggtgactcacactttaggagaagattgttggaaaattaagtgtgagtgattatgtctcacatcgact 2463188  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 60 - 275
Target Start/End: Original strand, 11197080 - 11197294
Alignment:
Q  60 cattgccgctcacaacgattctcagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatca 159  Q
    |||||||||||  |||| | | |||||| || |||||| ||||||||||| |||  ||||||| | || | ||||| ||| |||||||| ||||||||||    
T  11197080 cattgccgctccaaacgctccccagactcccaaacaaactggtatcagag-cctagttaggcttgctgggggagtgggagcgggatcctggtgtggatca 11197178  T
Q  160 tcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcgactgaaaattgaagaaacgtttga 259  Q
    |||||||||||||| ||||| |||||| |  || ||||| ||  |||  ||| || | |||||||| ||||||||||||  |||| || |||||||| ||    
T  11197179 tcctagtgatgtgggtgagtaacacttgattgggagattgttaaaaaccaagtgtgagtgattatgcctcacatcgactagaaatggaggaaacgttgga 11197278  T
Q  260 tacataaaagaggaga 275  Q
    || |||| ||||||||    
T  11197279 tatataagagaggaga 11197294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 10396346 - 10396484
Alignment:
Q  137 gagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcga 236  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||| |  || ||||| |||||||| ||| || | ||||||||||||| || ||    
T  10396346 gagtgggatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagggggagattgttggaaatcaagtgtgagtgattatgtctcatattga 10396445  T
Q  237 ctgaaaattgaagaaacgtttgatacataaaagaggaga 275  Q
    ||  |||| || |||| ||| |||| |||| ||||||||    
T  10396446 ctagaaatggaggaaatgttggatatataagagaggaga 10396484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 34946345 - 34946242
Alignment:
Q  131 gagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctca 230  Q
    ||||| || ||||||| |||| ||||||||||||||||||||| |||||||||||| | ||| ||||| |||||||| ||| || | |||| ||||| ||    
T  34946345 gagtgggactgggatcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagattgttggaaatcaagtgtgagtgataatgtccca 34946246  T
Q  231 catc 234  Q
    ||||    
T  34946245 catc 34946242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 2917363 - 2917270
Alignment:
Q  142 ggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcg 235  Q
    |||||| ||||||||| | ||||||||||||| |||||||||||| |  |||||||| |||||||| || ||| | |||| ||||| |||||||    
T  2917363 ggatccaagtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgttggaaatcaatcgtgagtgataatgtcccacatcg 2917270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 47680804 - 47680891
Alignment:
Q  99 tggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 186  Q
    ||||||||||| |||| ||||||||  || | ||| | |||||||||||||||| ||||||  |||||||||||| ||| ||||||||    
T  47680804 tggtatcagagccctggttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactcacactt 47680891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 11307796 - 11307706
Alignment:
Q  148 tagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcgact 238  Q
    ||||||||||||  |||||||||||||||| ||||| || |  |||||||| |  ||||||||| || | ||||| |||||||||||||||    
T  11307796 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgtcagaaattaagtgtgagtgattgtgtctcacatcgact 11307706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 12718104 - 12718008
Alignment:
Q  89 cccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 186  Q
    ||||| |||||||||| |||| |||  ||||||| | || | ||||| |||  |||||||||| ||||||||||||||||||||| | ||||||||||    
T  12718104 cccaataaattggtattagag-cctagttaggcttgctgggggagtgggagcaggatcctagtatggatcatcctagtgatgtgggttagtcacactt 12718008  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 11307570 - 11307480
Alignment:
Q  82 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtg 172  Q
    |||||| ||||||||| |||||||| ||  ||| ||||||| |||| | | | | ||||||| |||||||||||||||  |||||||||||    
T  11307570 cagactccccaacaaactggtatcatagctctggttaggcttgatgggggtgcgggagtgggttcctagtgtggatcaggctagtgatgtg 11307480  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 89 - 266
Target Start/End: Complemental strand, 7301576 - 7301399
Alignment:
Q  89 cccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaa 188  Q
    ||||||||| | ||||||||| | || |||||||||||| | ||||| ||| ||||||||| |||||||||  |||||||||||| ||||||||| || |    
T  7301576 cccaacaaactagtatcagagccatggttaggctcgatgggggagtgggagcgggatcctaatgtggatcaggctagtgatgtgggtgagtcacagttga 7301477  T
Q  189 aaggaagattattggaaattaagcgtaactgattatgtctcacatcgactgaaaattgaagaaacgtttgatacataa 266  Q
       | | ||| ||| |||||||| || | |||||||||| ||||||||||  |||| || |||||||| |||| ||||    
T  7301476 ggaggatattgttgaaaattaagtgtgagtgattatgtcccacatcgactagaaatggaggaaacgttggatatataa 7301399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 11637955 - 11637848
Alignment:
Q  131 gagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctca 230  Q
    ||||| ||||||||||||  |||||||||| ||||| |||||| |||||||||||| |  |||||||| ||| |||| ||| || | |||| |||||  |    
T  11637955 gagtgagagtgggatccttatgtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttgaaaatcaagtgtgagtgataatgtccaa 11637856  T
Q  231 catcgact 238  Q
    ||||||||    
T  11637855 catcgact 11637848  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 3671133 - 3671046
Alignment:
Q  82 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatg 170  Q
    |||||| ||||||||||||||||||||||| ||  |||||| | || | ||||| ||| |||||||||||||||||| |||||||||||    
T  3671133 cagactccccaacaaattggtatcagagtc-tggctaggcttgctgggggagtgggagcgggatcctagtgtggatcgtcctagtgatg 3671046  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 5981708 - 5981569
Alignment:
Q  99 tggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagatt 198  Q
    ||||||||||  |||| ||||||||| || | ||||| ||| |||||||||||||||||||  |||||||||||| ||| |||| ||| |  || |||||    
T  5981708 tggtatcagaaccctggttaggctcggtggg-gagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacgcttgagggggagatt 5981610  T
Q  199 -attggaaattaagcgtaactgattatgtctcacatcgact 238  Q
      |||||||| ||| || | |||||||||| ||||||||||    
T  5981609 gtttggaaatcaagtgtgagtgattatgtcccacatcgact 5981569  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 16143362 - 16143438
Alignment:
Q  131 gagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaat 207  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||| |  || ||||| ||||||||    
T  16143362 gagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgagggggagattgttggaaat 16143438  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 32200975 - 32201107
Alignment:
Q  143 gatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcgactgaaa 242  Q
    ||||||| ||| |||||| |||||||||||| |||||||| |||||  || ||||| |||| ||| ||  || | ||||||||||||||||||||| |||    
T  32200975 gatcctaatgtagatcatgctagtgatgtgggtgagtcacgcttaagggggagattgttgggaatcaaatgtgagtgattatgtctcacatcgactaaaa 32201074  T
Q  243 attgaagaaacgtttgatacataaaagaggaga 275  Q
    ||  | |||| |||||||| | || ||||||||    
T  32201075 atgaaggaaatgtttgatatacaagagaggaga 32201107  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 40196045 - 40195910
Alignment:
Q  141 gggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattatt-ggaaattaagcgtaactgattatgtctcacatcgactg 239  Q
    |||||||||||||||||||  |||||||||||| ||| |||||||| |  || ||||| || |||||| ||| || | ||||||||| |||||||||||     
T  40196045 gggatcctagtgtggatcaggctagtgatgtgggtgactcacacttgagggggagattgttgggaaatcaagtgtgagtgattatgtttcacatcgacta 40195946  T
Q  240 aaaattgaagaaacgtttgatacataaaagaggaga 275  Q
      ||| || |||||||| |||| |||| ||||||||    
T  40195945 ggaatggaggaaacgttggatatataagagaggaga 40195910  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 16869736 - 16869693
Alignment:
Q  143 gatcctagtgtggatcatcctagtgatgtggatgagtcacactt 186  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||    
T  16869736 gatcctagtgtggatcatgctagtgatgtgggtgattcacactt 16869693  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 43978796 - 43978665
Alignment:
Q  144 atcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattgg-aaattaagcgtaactgattatgtctcacatcgactgaaa 242  Q
    ||||||||||||||||  |||||||||||| ||| |||||||| |  || ||||| |||| |||| ||| || | |||||||||| ||||||||||   |    
T  43978796 atcctagtgtggatcaaactagtgatgtgg-tgattcacacttgagggggagattgttggaaaatcaagtgtgagtgattatgtcccacatcgactagga 43978698  T
Q  243 attgaagaaacgtttgatacataaaagaggaga 275  Q
    || || ||||| || |||| |||| ||||||||    
T  43978697 atggaggaaacattggatatataagagaggaga 43978665  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 11727874 - 11727800
Alignment:
Q  137 gagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaag 211  Q
    |||||||||||||||||||||||  |||||||||||| ||| |||||||  | ||| ||||||||| ||||||||    
T  11727874 gagtgggatcctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagattattgaaaattaag 11727800  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 35414424 - 35414321
Alignment:
Q  82 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtca 181  Q
    |||||| ||||| || |||||||||||||| |||| ||||| | | || ||||||||  |||||||||||||||| | || ||||| | |||||||||||    
T  35414424 cagactccccaataatttggtatcagagtcttgtt-aggcttgctaagggagtgtgaacgggatcctagtgtggaccgtcttagtggtttggatgagtca 35414326  T
Q  182 cactt 186  Q
    |||||    
T  35414325 cactt 35414321  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 35448762 - 35448705
Alignment:
Q  218 tgattatgtctcacatcgactgaaaattgaagaaacgtttgatacataaaagaggaga 275  Q
    |||||||||||||||||||||  |||| || ||||||||||||| |||| ||||||||    
T  35448762 tgattatgtctcacatcgactagaaatagaggaaacgtttgatatataagagaggaga 35448705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 44981996 - 44981941
Alignment:
Q  132 agtgtgagtgggatcctagtgtggatc-atcctagtgatgtggatgagtcacactt 186  Q
    ||||||||||||||||||||||||||| |  |||||||||||| ||| ||||||||    
T  44981996 agtgtgagtgggatcctagtgtggatcaaggctagtgatgtgggtgactcacactt 44981941  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 40053342 - 40053431
Alignment:
Q  96 aattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 186  Q
    |||||||||||||| |||  |||||||||||| | ||| |  |||||||||||||  |||||||  |||||||||||| ||| ||||||||    
T  40053342 aattggtatcagagccctcattaggctcgatggg-gagcggaagtgggatcctagcctggatcaggctagtgatgtgggtgactcacactt 40053431  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 28226540 - 28226685
Alignment:
Q  89 cccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaa 188  Q
    ||||||||| ||||||||||| |||  |||| || | || ||||||| ||| ||||||||||| || |||| |||||||||| || |||||||| ||| |    
T  28226540 cccaacaaactggtatcagag-cctagttagacttgctgggagagtgggagcgggatcctagt-tgaatcaacctagtgatgagg-tgagtcacgcttga 28226636  T
Q  189 aaggaagattattggaaattaagcgtaactgattatgtctcacatcgac 237  Q
      || ||||| |||||||| ||| || |||||| || || |||||||||    
T  28226637 gggggagattgttggaaatcaagtgtgactgataatatcacacatcgac 28226685  T

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Target: scaffold0548 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 4286 - 4196
Alignment:
Q  148 tagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgattatgtctcacatcgact 238  Q
    ||||||||||||  |||||||||||||||| ||||| || |  |||||||| |  ||||||||| || | ||||| |||||||||||||||    
T  4286 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgtcagaaattaagtgtgagtgattgtgtctcacatcgact 4196  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 14168868 - 14168965
Alignment:
Q  142 ggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattgga-aattaagcgtaactgattatgtctcacatcgact 238  Q
    |||| |||||||||||||| |||||||||||||||| ||| |||| |  || ||||| ||||| ||| ||| ||||  ||||||||| ||||||||||    
T  14168868 ggattctagtgtggatcatgctagtgatgtggatgattcatacttgagggggagattgttggataatcaagtgtaagggattatgtcccacatcgact 14168965  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 41341389 - 41341451
Alignment:
Q  141 gggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattgg 203  Q
    |||||||||||||||||||  |||||||||||| ||| |||||||| |  || ||||||||||    
T  41341389 gggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattattgg 41341451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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