View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_low_10 (Length: 382)
Name: NF21176_low_10
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 512500 - 512732
Alignment:
| Q |
19 |
gtagttattcctttaactagaccaatttagttgcaccctatttttcaactagcaaaatataataatttacatggctaagcacacatgctagcaattgaat |
118 |
Q |
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| T |
512500 |
gtagttattcctttaactagaccaatttagttgcaccctatttttcaactagcaaaatataataatttacatgcctaagcacacatgctagcaattgaat |
512599 |
T |
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| Q |
119 |
tgagtggtacattcctttcaaaaggaacaaaagaagcaattgaataccctttttctaccaactactaatacgagagtttggcacctacatcccacagcag |
218 |
Q |
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| T |
512600 |
tgagtggtacattcctttcaaaaagaacaaaagaagcaattcaataccctttttctaccaactactaatacgagagtttggcacctacatcccacagcag |
512699 |
T |
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| Q |
219 |
cacacatatttattgtacactcaattacttagg |
251 |
Q |
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| T |
512700 |
cacacatatttattgtacactcaattacttagg |
512732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 512762 - 512832
Alignment:
| Q |
304 |
tctcttgaatgtacacaatacttccctccaataaattcttgctttgattgaatacaaacttttttcttctc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
512762 |
tctcttgaatgtacacaatacttccctccaataaattcttgctttgattgaatacaaacttttttcttctc |
512832 |
T |
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