View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_low_11 (Length: 376)
Name: NF21176_low_11
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 11119809 - 11119442
Alignment:
| Q |
1 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaaccaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
11119809 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacctcaagccattcagtaatgatactgatgcaactgca |
11119710 |
T |
|
| Q |
101 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcgggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
11119709 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcgggg |
11119610 |
T |
|
| Q |
201 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaat |
300 |
Q |
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| T |
11119609 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaat |
11119510 |
T |
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| Q |
301 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
368 |
Q |
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| T |
11119509 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
11119442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 12206306 - 12205970
Alignment:
| Q |
1 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaaccaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| | |
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| T |
12206306 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacgtcaagccaatcaggaatgatactgatgcaacctta |
12206207 |
T |
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| Q |
101 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcgggg |
200 |
Q |
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|||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12206206 |
atgtctgattatgctcgtgataagaactgtgatgttgaa------------cctaaggtgaatttaggaaatgctataaatgttgctgatgttatcgggg |
12206119 |
T |
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| Q |
201 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaat |
300 |
Q |
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| T |
12206118 |
aacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaat |
12206019 |
T |
|
| Q |
301 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggtt |
349 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12206018 |
taaaggcgcacactttaatgatagtgaagaagagaggatggctggggtt |
12205970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 32741513 - 32741144
Alignment:
| Q |
1 |
tacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaaccaca |
100 |
Q |
| |
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||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
32741513 |
tacttttgatgaatagttagtaaagctatggtggaaacatgagagtggttcattggatgaagacctcaagccattcaggaatgatactgatgcaactgca |
32741414 |
T |
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| Q |
101 |
atgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcgggg |
200 |
Q |
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|||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
32741413 |
atgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattgggg |
32741314 |
T |
|
| Q |
201 |
aacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaat |
300 |
Q |
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||| |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||| |
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| T |
32741313 |
aacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaat |
32741214 |
T |
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| Q |
301 |
caaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatgtc |
370 |
Q |
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|||||||||| |||| |||| ||||||||||||| |||||||| |||||||||| |||||||| ||||| |
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| T |
32741213 |
taaaggcacacgctttgatgatagtgaagaagagaagatggctgcggttgatgatgggtttgataatgtc |
32741144 |
T |
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