View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_low_17 (Length: 337)
Name: NF21176_low_17
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 40 - 324
Target Start/End: Original strand, 24485980 - 24486262
Alignment:
| Q |
40 |
acacgttaaaaatggatatttcaactatctattatttaatggatacggaattatggatacaaattgaatggatagagataataaaatagccatcaccatt |
139 |
Q |
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| T |
24485980 |
acacgttaaaaatagatatttcaactatctattatttaatggatacggaattatggatacaaattgaatggatagagataataaaatagccataaccatt |
24486079 |
T |
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| Q |
140 |
cggagtagaggtatttggccgatttgacattcacggatgatctttaaagacaaatcatattgccaaagggtacaaacttctttgaaaggttgataacttg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |
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| T |
24486080 |
cggagtagaggtatttggccgatttgacattcacggatgatctttaaagacaaatcatattgccaaagggtgc-aacttctttg-aaggttgataacttg |
24486177 |
T |
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| Q |
240 |
cgctttaagttatatgtcctatctatatgtaagtaaggattaatttctctggggaaagccttccatgagttctcgttttcatctc |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
24486178 |
cgctttaagttatatgtcctatctatatgtaagtaaggattaatttctctggggaaagccttctatgagttctcgttttcttctc |
24486262 |
T |
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