View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_low_18 (Length: 293)
Name: NF21176_low_18
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7302833 - 7303114
Alignment:
| Q |
1 |
acaccaacggtggaaatgtaatatgggagagggtattttcaaacctaattaatttgaggttctacaaaattaaaacagccctatcatatactccatcatc |
100 |
Q |
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| T |
7302833 |
acaccaacggtggaaatgtaatatgggagagggtattttcaaacctaattaatttgaggttctacaaaattaaaacagccctatcatatactccatcatc |
7302932 |
T |
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| Q |
101 |
tttaatctttagaatagggccagtaacataataataactttataattcacattaaaatatagcaagaataagttttgttgttccagcaacaagaagacaa |
200 |
Q |
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| T |
7302933 |
t-------ttagaatggggccagtaacataataataactttataattcacattaaaatatagcaagaataagttttgttgttccagcaacaagaagacaa |
7303025 |
T |
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| Q |
201 |
tgc---------------tattatatcaaagaagcatacttgttcagttgttcacattcaactaactatccagtaaccaatgaatttac |
274 |
Q |
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| T |
7303026 |
tgctattatatcaagaggtattatatcaaagaagcatacttgttcagttgttcacattcaactaactatccagtaaccaatgaatttac |
7303114 |
T |
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