View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21176_low_20 (Length: 278)

Name: NF21176_low_20
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21176_low_20
NF21176_low_20
[»] chr6 (2 HSPs)
chr6 (143-243)||(22577507-22577607)
chr6 (1-50)||(22577432-22577481)
[»] chr3 (4 HSPs)
chr3 (143-243)||(27741451-27741551)
chr3 (1-52)||(14993566-14993617)
chr3 (1-52)||(27741619-27741670)
chr3 (143-231)||(43275674-43275761)
[»] chr4 (5 HSPs)
chr4 (157-243)||(19658095-19658182)
chr4 (143-209)||(6409749-6409815)
chr4 (1-52)||(19657940-19657991)
chr4 (157-211)||(24957910-24957964)
chr4 (2-34)||(14791937-14791969)
[»] scaffold0005 (1 HSPs)
scaffold0005 (2-34)||(47762-47794)
[»] chr8 (1 HSPs)
chr8 (147-211)||(6443754-6443818)
[»] chr7 (1 HSPs)
chr7 (2-34)||(47588728-47588760)
[»] chr2 (1 HSPs)
chr2 (2-34)||(3258007-3258039)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 22577507 - 22577607
Alignment:
Q  143 ttagctctcctaaacaccttcatgcaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaaccccggtaacatcaaacaacaagaaaattgctcc 242  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22577507 ttagctctcccaaacaccttcatccaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaaccccggtaacatcaaacaacaagaaaattcctcc 22577606  T
Q  243 t 243  Q
    |    
T  22577607 t 22577607  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 22577432 - 22577481
Alignment:
Q  1 tcatcacaagcagccacaaaaacaacttccaccatttcatttcgttgctc 50  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  22577432 tcatcacaagcagccacaaaaacaacttcgaccattacatttcgttgctc 22577481  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 27741551 - 27741451
Alignment:
Q  143 ttagctctcctaaacaccttcatgcaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaaccccggtaacatcaaacaacaagaaaattgctcc 242  Q
    |||| ||||| ||||| |||||| |||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  27741551 ttagttctcccaaacatcttcatccaaaaacacacctcccaatgaacagtaaaaaccgaccaagaacccaggtaacatcatacaacaagaaaattgctcc 27741452  T
Q  243 t 243  Q
    |    
T  27741451 t 27741451  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14993566 - 14993617
Alignment:
Q  1 tcatcacaagcagccacaaaaacaacttccaccatttcatttcgttgctcgc 52  Q
    ||||||||||| | |||||||||||||||||||||| |||| || |||||||    
T  14993566 tcatcacaagccgtcacaaaaacaacttccaccattacattccgctgctcgc 14993617  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27741670 - 27741619
Alignment:
Q  1 tcatcacaagcagccacaaaaacaacttccaccatttcatttcgttgctcgc 52  Q
    ||||||||||  |||||||||||||| ||||||||| |||| ||||||||||    
T  27741670 tcatcacaagttgccacaaaaacaacatccaccattacattccgttgctcgc 27741619  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 43275674 - 43275761
Alignment:
Q  143 ttagctctcctaaacaccttcatgcaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaaccccggtaacatcaaacaacaag 231  Q
    |||||||||| || ||||||||| |||||  ||||||| |||||||| ||||||  | |||||||||||  ||| ||||| ||||||||    
T  43275674 ttagctctcccaagcaccttcatccaaaac-acacctcacaaagaaccgcaaaaggcaaccaaaaacccttgtaccatcatacaacaag 43275761  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 19658095 - 19658182
Alignment:
Q  157 caccttcatgcaaaaatacacctcccaaagaa-cagcaaaaaccgaccaaaaaccccggtaacatcaaacaacaagaaaattgctcct 243  Q
    ||||||||| |||| | ||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  19658095 caccttcatccaaacacacacctcccaaagaaacagcaaaaaccgcccaaaaaccccgttaacatcatacaacaagaaaattgctcct 19658182  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 6409749 - 6409815
Alignment:
Q  143 ttagctctcctaaacaccttcatgcaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaac 209  Q
    ||||||||||  | ||||||||| |||||| ||||||||||||||| || |||||||||||||||||    
T  6409749 ttagctctcccgagcaccttcatccaaaaacacacctcccaaagaagagaaaaaaccgaccaaaaac 6409815  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19657940 - 19657991
Alignment:
Q  1 tcatcacaagcagccacaaaaacaacttccaccatttcatttcgttgctcgc 52  Q
    ||||||||||| |||||||||||||||||||| ||| |||| || |||||||    
T  19657940 tcatcacaagctgccacaaaaacaacttccacaattacattccgctgctcgc 19657991  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 24957964 - 24957910
Alignment:
Q  157 caccttcatgcaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaaccc 211  Q
    ||||||||| |||||| |||||||  ||||||| | |||||||||||||||||||    
T  24957964 caccttcatccaaaaacacacctcttaaagaaccgtaaaaaccgaccaaaaaccc 24957910  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 14791937 - 14791969
Alignment:
Q  2 catcacaagcagccacaaaaacaacttccacca 34  Q
    |||||||||| ||||||||||||||||||||||    
T  14791937 catcacaagctgccacaaaaacaacttccacca 14791969  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 47794 - 47762
Alignment:
Q  2 catcacaagcagccacaaaaacaacttccacca 34  Q
    |||||||||| ||||||||||||||||||||||    
T  47794 catcacaagctgccacaaaaacaacttccacca 47762  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 6443754 - 6443818
Alignment:
Q  147 ctctcctaaacaccttcatgcaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaaccc 211  Q
    ||||||| | ||| ||||| |||||||||||||||||| ||||  |||||||| | |||||||||    
T  6443754 ctctcctgagcactttcatccaaaaatacacctcccaaggaaccacaaaaaccaatcaaaaaccc 6443818  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 47588728 - 47588760
Alignment:
Q  2 catcacaagcagccacaaaaacaacttccacca 34  Q
    |||||||||| ||||||||||||||||||||||    
T  47588728 catcacaagctgccacaaaaacaacttccacca 47588760  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 3258039 - 3258007
Alignment:
Q  2 catcacaagcagccacaaaaacaacttccacca 34  Q
    |||||||||| ||||||||||||||||||||||    
T  3258039 catcacaagctgccacaaaaacaacttccacca 3258007  T

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