View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_low_21 (Length: 252)
Name: NF21176_low_21
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 38845037 - 38844813
Alignment:
| Q |
17 |
aacatcttctaattaaaccgtgtaaattcaaattttcaactaatcacttataattcaatctatcagaagcaaaatcaatttcaactaatcaaaatccaca |
116 |
Q |
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| T |
38845037 |
aacatcttctaattaaaccgtgtaaattcaaattttcaactaatcacttataattcaatctatcagaagcaaaatcaatttcaactaatcaaaatccaca |
38844938 |
T |
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| Q |
117 |
aaaaagaagaacataactactacctgagacatttcacctttaagccgattaatcctatcagcattcggatcactagagaaatactccatctgctgactca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38844937 |
aaaaagaagaacataactactacctgagacatttcacctttaagccgattaatcctatcagcattcggatcactagagaaatactccatctgctgattca |
38844838 |
T |
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| Q |
217 |
aaaccctagaaaactcatcattcat |
241 |
Q |
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| T |
38844837 |
aaaccctagaaaactcatcattcat |
38844813 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 19065137 - 19065195
Alignment:
| Q |
183 |
ggatcactagagaaatactccatctgctgactcaaaaccctagaaaactcatcattcat |
241 |
Q |
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|||| |||||| ||| ||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
19065137 |
ggattactagaaaaaaactccatttgctgatgcaaaacccttgaaaactcatcattcat |
19065195 |
T |
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