View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21176_low_9 (Length: 385)
Name: NF21176_low_9
Description: NF21176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21176_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 40313472 - 40313104
Alignment:
| Q |
12 |
cttcttttcactcattctgctacttgtttggaatttccttctatctatactagaaaagattaaaccttacaaaagattaaaatacaaagggttagtacat |
111 |
Q |
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| T |
40313472 |
cttcttttcactcattctgctacttgtttggaatttccttctatctatactagaaaagattaaaccttacaaaagattaaaatacaaagggttagtacat |
40313373 |
T |
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| Q |
112 |
tgtaagaaataattgaaaatattttaataataaatatttctttgcaaggtatgatttgaaagcttacaacatgtttgtagacttgtagggcagatatgtg |
211 |
Q |
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| T |
40313372 |
tgtaagaaataattgaaaatattttaataataaatatttctttacaaggtatgatttgaaagcttacaacatgtttgtagacttgtagggcagatatgtg |
40313273 |
T |
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| Q |
212 |
aaattgatattaatttaaggaacatgtgttgttgccgaatccatatggattaagaagcttttgtcgttggtcttctacgtcccaaaatgatccatcagtg |
311 |
Q |
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| T |
40313272 |
aaattgatattaatttaaggaacatgtgttgttgccgaatccatatggattaagaagcttttgtcgttggtcttctacgtcccaaaatggtccatcagtg |
40313173 |
T |
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| Q |
312 |
tgctgaaaatgatatatgcttttcatcataataaggaaatggtgaaagtactttttgtttcttctctct |
380 |
Q |
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| T |
40313172 |
tgctgaaaatgatatatgcttttcatcataataaggaaatggtgaaagtactatttgtttcttttctct |
40313104 |
T |
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