View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21177_high_5 (Length: 419)
Name: NF21177_high_5
Description: NF21177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21177_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 400
Target Start/End: Original strand, 7754191 - 7754593
Alignment:
| Q |
5 |
tttcaagttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc------catgcacccaaaccataaa-tcggatat |
97 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
7754191 |
tttcaagttatatttacaattcttactctaattctttattcaaaataagagactctctttacctccaattatcatgcacccaaactataaaatcggatat |
7754290 |
T |
|
| Q |
98 |
ccctaaatcnnnnnnnnntcttattctttttcaaacatgattaaacaattatttttcacaatcagcagcaatctgataaaattatgaaaagacaccatca |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7754291 |
ccctaaatcaaaaaaaattcttattctttttcaaacatgattaaacaactatttttcacaatcagcagcaatctgataaaatcatgaaaagacaccatca |
7754390 |
T |
|
| Q |
198 |
ataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaattacaag |
297 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7754391 |
ataaaatatctacaagcaccaagctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaattacaag |
7754490 |
T |
|
| Q |
298 |
ccacaaaaacaacaagaatgcatcgcaaattttaattgtatacagcgtaatggagtaatggagttttatatgttggaaatgtgctgagcaatatccctct |
397 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7754491 |
ccacaaaagcaacaagaatgcatcgcaaattttaattgtatacagcgtaatggagtaatggagttttatatgttggaaatgtgctgagcaatatccctct |
7754590 |
T |
|
| Q |
398 |
taa |
400 |
Q |
| |
|
||| |
|
|
| T |
7754591 |
taa |
7754593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 194 - 400
Target Start/End: Original strand, 43552423 - 43552629
Alignment:
| Q |
194 |
atcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaatta |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43552423 |
atcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaatta |
43552522 |
T |
|
| Q |
294 |
caagccacaaaaacaacaagaatgcatcgcaaattttaattgtatacagcgtaatggagtaatggagttttatatgttggaaatgtgctgagcaatatcc |
393 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43552523 |
caagccacaaaagcaacaagaatgcattgcaaattttaattgtatacagcgtaatggagtaatggagtcttatatgttggaaatgtgctgagcaatatcc |
43552622 |
T |
|
| Q |
394 |
ctcttaa |
400 |
Q |
| |
|
||||||| |
|
|
| T |
43552623 |
ctcttaa |
43552629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 43552260 - 43552426
Alignment:
| Q |
2 |
tagtttcaagttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc------catgcacccaaaccat-aaatcgga |
94 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||| |||||||| |
|
|
| T |
43552260 |
tagtttcaagttatatttacaattcccactctaattctttgttcaaaataagatactttctttaccttcaattatcatgcatccaaaccataaaatcgga |
43552359 |
T |
|
| Q |
95 |
tatccctaaatcnnnnnnnnntcttattctttttcaaacatgattaaacaattatttttcacaatca |
161 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43552360 |
tatccctagatcaaacaaaattcttattctttttcaaacatgattaaacaactatttttcacaatca |
43552426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 27918106 - 27918257
Alignment:
| Q |
181 |
atgaaaagacaccatcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaa |
280 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27918106 |
atgaaaatacaccatcaataaaatctctacaagcaccaatctaactcctttaaaattgcttgaacaaacttctaatcaaccaactataatacagaa---- |
27918201 |
T |
|
| Q |
281 |
agctgaagaattacaagccacaaaaacaacaagaatgcatcgcaaattttaattgtat |
338 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27918202 |
--ctgaagaattacaagccacaaaagcaacaagaatgcatcgcaaattttaattgtat |
27918257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 33064348 - 33064233
Alignment:
| Q |
188 |
gacaccatcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaa |
287 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
33064348 |
gacaccatcaataaaatctctacaagcaccaatctaactcctttaaaattgtttgaacagacttgtcatcaaccaactataatacagaaggaaaactgaa |
33064249 |
T |
|
| Q |
288 |
gaattacaagccacaa |
303 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
33064248 |
gaattacaagcaacaa |
33064233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 709756 - 709635
Alignment:
| Q |
214 |
caccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaattacaagccacaaaaacaacaag |
313 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
709756 |
caccaatctaacttctttaaaattatttgaacaaacttctaatcaaccaactata---cagaaggaaaattgaagaattacaagccacaaaagcaacaag |
709660 |
T |
|
| Q |
314 |
aatgcatcgcaaattttaattgtat |
338 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
709659 |
aatgcatcacaaattttaattgtat |
709635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 10966272 - 10966214
Alignment:
| Q |
12 |
ttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc |
70 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
10966272 |
ttatctttacaattcctactctaattctttgttcaaaatgagatactctcttttcctcc |
10966214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 10965720 - 10965642
Alignment:
| Q |
192 |
ccatcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagac-ttctaatcaaccaactataa |
269 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||| ||||| ||||||||||||||||||| | ||||| |||| ||||||||| |
|
|
| T |
10965720 |
ccatcaacaaaatctctccaagcaccaatccaactcatttaaaattgcttgaacaggctttctattcaaacaactataa |
10965642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 10965634 - 10965587
Alignment:
| Q |
291 |
ttacaagccacaaaaacaacaagaatgcatcgcaaattttaattgtat |
338 |
Q |
| |
|
||||| ||||| ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10965634 |
ttacaggccacgaaagcaataagaatgcatcgcaaattttaattgtat |
10965587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 38406989 - 38406921
Alignment:
| Q |
2 |
tagtttcaagttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc |
70 |
Q |
| |
|
||||||| | |||| ||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
38406989 |
tagtttccacttatctttacaattcgtactctaattctttgttcaaaatgagatactctttttacctcc |
38406921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University