View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21177_high_8 (Length: 345)

Name: NF21177_high_8
Description: NF21177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21177_high_8
NF21177_high_8
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-88)||(253132-253204)
[»] chr4 (15 HSPs)
chr4 (16-88)||(14564171-14564243)
chr4 (19-80)||(4954084-4954145)
chr4 (19-80)||(49136514-49136575)
chr4 (16-80)||(46926037-46926101)
chr4 (19-80)||(39636777-39636838)
chr4 (19-80)||(46830102-46830163)
chr4 (44-80)||(54488622-54488658)
chr4 (13-80)||(29149340-29149407)
chr4 (13-80)||(49519716-49519783)
chr4 (18-80)||(38263890-38263952)
chr4 (47-80)||(6138653-6138686)
chr4 (19-80)||(56241868-56241929)
chr4 (48-80)||(33574199-33574231)
chr4 (52-80)||(41866179-41866207)
chr4 (52-80)||(48550460-48550488)
[»] chr8 (7 HSPs)
chr8 (17-88)||(440214-440285)
chr8 (19-80)||(6399141-6399202)
chr8 (19-78)||(38114460-38114518)
chr8 (13-80)||(40742133-40742200)
chr8 (19-80)||(3097239-3097300)
chr8 (19-80)||(26243139-26243200)
chr8 (44-80)||(31246348-31246384)
[»] chr7 (11 HSPs)
chr7 (16-86)||(42904578-42904648)
chr7 (19-80)||(3622480-3622541)
chr7 (19-80)||(12632103-12632164)
chr7 (19-80)||(37562598-37562659)
chr7 (18-73)||(32205952-32206007)
chr7 (22-80)||(48459741-48459799)
chr7 (47-80)||(3750742-3750775)
chr7 (47-80)||(44967419-44967452)
chr7 (20-80)||(3375519-3375579)
chr7 (28-80)||(38230105-38230157)
chr7 (44-80)||(42752211-42752247)
[»] chr1 (10 HSPs)
chr1 (19-80)||(42850253-42850314)
chr1 (47-88)||(49243008-49243049)
chr1 (19-73)||(4369843-4369897)
chr1 (22-80)||(48510942-48511000)
chr1 (22-80)||(5410674-5410731)
chr1 (22-73)||(7826395-7826446)
chr1 (19-80)||(47123417-47123478)
chr1 (47-80)||(11051345-11051378)
chr1 (47-80)||(15884286-15884319)
chr1 (47-80)||(31223433-31223466)
[»] chr3 (10 HSPs)
chr3 (23-80)||(4984592-4984649)
chr3 (19-69)||(25848039-25848089)
chr3 (19-73)||(52966849-52966903)
chr3 (13-80)||(31084209-31084275)
chr3 (19-80)||(44224769-44224830)
chr3 (13-80)||(26519665-26519732)
chr3 (19-80)||(3348250-3348311)
chr3 (22-80)||(42475719-42475777)
chr3 (47-88)||(23207093-23207134)
chr3 (52-80)||(38340845-38340873)
[»] chr5 (5 HSPs)
chr5 (19-78)||(28869535-28869594)
chr5 (16-80)||(34106977-34107041)
chr5 (13-80)||(3667869-3667936)
chr5 (19-80)||(39987997-39988058)
chr5 (52-80)||(40885265-40885293)
[»] chr2 (10 HSPs)
chr2 (19-80)||(9988532-9988593)
chr2 (19-88)||(28641658-28641727)
chr2 (19-80)||(31224696-31224757)
chr2 (48-88)||(34997259-34997299)
chr2 (13-80)||(2213516-2213583)
chr2 (13-80)||(28127318-28127385)
chr2 (25-79)||(11240693-11240747)
chr2 (29-87)||(45714692-45714750)
chr2 (47-88)||(7296199-7296240)
chr2 (19-80)||(28261310-28261371)
[»] chr6 (2 HSPs)
chr6 (13-80)||(16442383-16442450)
chr6 (19-80)||(29409284-29409345)


Alignment Details
Target: scaffold0005 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 253132 - 253204
Alignment:
Q  16 attaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||    
T  253132 attaactcataagaatcacttttaactgaaggtatccaaacataaatcaattcatatccaactcacatttaac 253204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 14564243 - 14564171
Alignment:
Q  16 attaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||    
T  14564243 attaactcataagaatcacttttaactgaaggtatccaaacataaatcaattcatatccaactcacatttaac 14564171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 4954145 - 4954084
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||  || ||||  |||||||||||||||||||||| ||||||    
T  4954145 aactcataagaatcacttttaagtgagggtacccaaacataaatcaattcacatcaaactca 4954084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 49136514 - 49136575
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||  ||  |||| |||||||||||||||||||||| ||||||    
T  49136514 aactcataagaatcacttttaagtgagtgtatccaaacataaatcaattcacatcaaactca 49136575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 46926037 - 46926101
Alignment:
Q  16 attaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||||| |||||||||||| |||  |||| |||||||||||||||||||||| ||||||    
T  46926037 attaattcataaaaatcacttttaaacgagtgtatccaaacataaatcaattcacatctaactca 46926101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 39636777 - 39636838
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| ||||||||||||||||   |  |||| |||||||||||||||||||||||||||||    
T  39636777 aactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattcacatccaactca 39636838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 46830163 - 46830102
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||| ||||||   |  |||| |||||||||||||||||||||||||||||    
T  46830163 aactcataagaatcaattttaagaaagtgtatccaaacataaatcaattcacatccaactca 46830102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 54488622 - 54488658
Alignment:
Q  44 aaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||||||||| |||||||    
T  54488622 aaggtattcaaacataaatcaattcacattcaactca 54488658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 29149407 - 29149340
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||| |||| ||||||||||||  ||  |||| ||||||||||||||||||||| |||||||    
T  29149407 aatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactca 29149340  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 49519716 - 49519783
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| || |||||||||||| |||||| | |  |||| ||||||||||| |||||||||||||||||    
T  49519716 aatatcaattcataagaatcatttttaagcaagtgtatccaaacataaataaattcacatccaactca 49519783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 38263890 - 38263952
Alignment:
Q  18 taactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||| |||||||||||  ||   ||||||||||||||| |||||||||| ||||||    
T  38263890 taactcataagtatcacttttaagtgagtatattcaaacataaattaattcacatcaaactca 38263952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 6138686 - 6138653
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactca 80  Q
    |||| |||||||||||||||||||||||||||||    
T  6138686 gtatccaaacataaatcaattcacatccaactca 6138653  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 56241929 - 56241868
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||    || |||| |||||||||||||||||| ||| ||||||    
T  56241929 aactcataagaatcacttttacattaatgtatccaaacataaatcaattcatatcaaactca 56241868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 33574199 - 33574231
Alignment:
Q  48 tattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||||| |||||||    
T  33574199 tattcaaacataaatcaattcacattcaactca 33574231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 41866179 - 41866207
Alignment:
Q  52 caaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||||||||||    
T  41866179 caaacataaatcaattcacatccaactca 41866207  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 48550488 - 48550460
Alignment:
Q  52 caaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||||||||||    
T  48550488 caaacataaatcaattcacatccaactca 48550460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 440285 - 440214
Alignment:
Q  17 ttaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    ||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||    
T  440285 ttaactcataagaatcatttttaactgaatgtatccaaacataaatcaattcacatccaactcacatttaac 440214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 6399202 - 6399141
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||  ||  ||||  ||||||||||||||||||||| ||||||    
T  6399202 aactcataagaatcacttttaagtgagtgtatcgaaacataaatcaattcacatcaaactca 6399141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 38114460 - 38114518
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaact 78  Q
    ||||||||||||||||||  ||||||  |||| ||||||| |||||||||||||||||||    
T  38114460 aactcataagaatcacttgaaaccgagtgtatccaaacat-aatcaattcacatccaact 38114518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 40742133 - 40742200
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| ||||||||||||||| |||||    |  |||| |||||||||||||||||||||||||||||    
T  40742133 aatatcaactcataagaatcaattttattaaagtgtatccaaacataaatcaattcacatccaactca 40742200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 3097300 - 3097239
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||  ||   ||| |||||||||||||||||| ||| ||||||    
T  3097300 aactcataagaatcacttttaagtgagtatatccaaacataaatcaattcatatcaaactca 3097239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 26243139 - 26243200
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||| | |   ||| |||||||||||||||||| ||| ||||||    
T  26243139 aactcataagaatcacttttaaacaattatatccaaacataaatcaattcatatcaaactca 26243200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 31246384 - 31246348
Alignment:
Q  44 aaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  31246384 aaggtatccaaacataaatcaattcacattcaactca 31246348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 42904578 - 42904648
Alignment:
Q  16 attaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactcatattta 86  Q
    ||||| ||||||||||||||||||| |||  ||||  ||||||||||||||||||||| ||||||| ||||    
T  42904578 attaattcataagaatcacttttaaacgagtgtatcaaaacataaatcaattcacatctaactcattttta 42904648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 3622541 - 3622480
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| ||||||||||||||||   |  |||| |||||||||||||||||||||||||||||    
T  3622541 aactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattcacatccaactca 3622480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 12632164 - 12632103
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||| |||    | ||||||||||||||||||||||| ||||||    
T  12632164 aactcataagaatcacttttaagcgagtacactcaaacataaatcaattcacatctaactca 12632103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 37562598 - 37562659
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||| |||||||||||||   |  |||| |||||||||||||||||||||||||||||    
T  37562598 aactcatatgaatcacttttaaataagtgtatccaaacataaatcaattcacatccaactca 37562659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 32205952 - 32206007
Alignment:
Q  18 taactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatc 73  Q
    |||||||||||||||||||||||   |  |||| ||||||||||||||||||||||    
T  32205952 taactcataagaatcacttttaagtaagtgtatccaaacataaatcaattcacatc 32206007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 48459741 - 48459799
Alignment:
Q  22 tcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||   |  |||| ||||||||||||||||||||| |||||||    
T  48459741 tcataagaatcacttttaagtaagtgtatccaaacataaatcaattcacattcaactca 48459799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 3750742 - 3750775
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactca 80  Q
    |||| |||||||||||||||||||||||||||||    
T  3750742 gtatccaaacataaatcaattcacatccaactca 3750775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 44967452 - 44967419
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||||||| |||||||    
T  44967452 gtattcaaacataaatcaattcacattcaactca 44967419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 3375519 - 3375579
Alignment:
Q  20 actcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||  ||  |||| |||||| ||||||||||||| | ||||||    
T  3375519 actcataagaatcacttttaagtgagtgtatccaaacacaaatcaattcacaccaaactca 3375579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 38230105 - 38230157
Alignment:
Q  28 gaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||   || |||| ||||||||||||||||||||| |||||||    
T  38230105 gaatcacttttaataaaatgtatccaaacataaatcaattcacattcaactca 38230157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 42752247 - 42752211
Alignment:
Q  44 aaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  42752247 aaggtatccaaacataaatcaattcacattcaactca 42752211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 42850314 - 42850253
Alignment:
Q  19 aactcataagaatcacttttaaccgaag-gtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  42850314 aactcataagaatcacttttaag-gaagtgtatccaaacataaatcaattcacatccaactca 42850253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 49243049 - 49243008
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  49243049 gtattcaaacataaatcaattcacatccaactcatttttaac 49243008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4369897 - 4369843
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatc 73  Q
    ||||||||||||||||||||||  || ||||  ||||||||||||||||||||||    
T  4369897 aactcataagaatcacttttaagtgagggtacccaaacataaatcaattcacatc 4369843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 48510942 - 48511000
Alignment:
Q  22 tcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||| | |  |||| ||||||||||||||||||||| |||||||    
T  48510942 tcataagaatcacttttaagcaagtgtatccaaacataaatcaattcacattcaactca 48511000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 5410674 - 5410731
Alignment:
Q  22 tcataagaatcacttttaaccgaag-gtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||  | || ||||||||||||||||||||| ||||||||||||    
T  5410674 tcataagaatcacttttaa--gtagtgtattcaaacataaatcaatttacatccaactca 5410731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 7826446 - 7826395
Alignment:
Q  22 tcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatc 73  Q
    |||||||||||||||||||  || ||||  ||||||||||||||||||||||    
T  7826446 tcataagaatcacttttaagtgagggtacccaaacataaatcaattcacatc 7826395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 47123417 - 47123478
Alignment:
Q  19 aactcataagaatcacttttaaccgaag-gtattcaaacataaatcaattcacatccaactca 80  Q
    |||| ||||||||||||||||| ||||| |||| |||||| ||||||||||||||| ||||||    
T  47123417 aacttataagaatcacttttaa-cgaagtgtatccaaacaaaaatcaattcacatctaactca 47123478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 11051378 - 11051345
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||||||| ||||||    
T  11051378 gtattcaaacataaatcaattcacatcaaactca 11051345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 15884286 - 15884319
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactca 80  Q
    |||| |||||||||||||||||||||||||||||    
T  15884286 gtatccaaacataaatcaattcacatccaactca 15884319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 31223433 - 31223466
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactca 80  Q
    |||| |||||||||||||||||||||||||||||    
T  31223433 gtatccaaacataaatcaattcacatccaactca 31223466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 4984592 - 4984649
Alignment:
Q  23 cataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||| |||  |||| |||||||||||||||||||||| ||||||    
T  4984592 cataagaatcacttttaaacgagtgtatccaaacataaatcaattcacatctaactca 4984649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 25848039 - 25848089
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattca 69  Q
    ||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  25848039 aactcataagaatcatttttaagtgaaggtatccaaacataaatcaattca 25848089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 52966903 - 52966849
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatc 73  Q
    ||||||||||||||||||||||  || ||||  ||||||||||||||||||||||    
T  52966903 aactcataagaatcacttttaagtgagggtacccaaacataaatcaattcacatc 52966849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 31084209 - 31084275
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaag-gtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| || |||||||||||||||||||  |||| |||| ||||||||||||||||||||| |||||||    
T  31084209 aatatcaagtcataagaatcacttttaa--gaagtgtatccaaacataaatcaattcacattcaactca 31084275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 44224769 - 44224830
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||  ||  |||| |||||||||||||||||| ||| ||||||    
T  44224769 aactcataagaatcacttttaagtgagtgtatccaaacataaatcaattcatatcaaactca 44224830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 26519665 - 26519732
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||| |||| ||||||||||||  ||  |||| ||||||||||||||||||||| |||||||    
T  26519665 aatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactca 26519732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3348250 - 3348311
Alignment:
Q  19 aactcataagaatcacttttaaccgaag-gtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||| ||||||||  |||| |||| |||||||||||||||| ||||||||||||    
T  3348250 aactcataagaattacttttaag-gaagtgtatccaaacataaatcaatttacatccaactca 3348311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 42475719 - 42475777
Alignment:
Q  22 tcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||| ||||||||  |  ||||||||||| ||||||||||||||| ||||||    
T  42475719 tcataagaatcgcttttaacaaagtgtattcaaacaaaaatcaattcacatctaactca 42475777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 23207134 - 23207093
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  23207134 gtatccaaacataaatcaattcacatcaaactcatttttaac 23207093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 38340845 - 38340873
Alignment:
Q  52 caaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||||||||||    
T  38340845 caaacataaatcaattcacatccaactca 38340873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 28869594 - 28869535
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaact 78  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||| |||||||||||    
T  28869594 aactcataagaatcacttttaagtaagtgtattcaaacataaatcaatccacatccaact 28869535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 34107041 - 34106977
Alignment:
Q  16 attaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||||||||| ||||||||  ||| ||||| |||||| |||||||||||||| ||||||    
T  34107041 attaattcataagaattacttttaaatgaatgtatttaaacattaatcaattcacatctaactca 34106977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 3667869 - 3667936
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||| |||| ||||||||||||  ||  |||| ||||||||||||||||||||| |||||||    
T  3667869 aatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactca 3667936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 39988058 - 39987997
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||||||||||   |  |||| ||||||||||||||||||| || ||||||    
T  39988058 aactcataagaatcacttttaaataagtgtatccaaacataaatcaattcacctcaaactca 39987997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 40885265 - 40885293
Alignment:
Q  52 caaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||||||||||    
T  40885265 caaacataaatcaattcacatccaactca 40885293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 9988593 - 9988532
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||| |||||||||||||   |  |||| |||||||||||||||||||||||||||||    
T  9988593 aactcatatgaatcacttttaaataagtgtatccaaacataaatcaattcacatccaactca 9988532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 28641658 - 28641727
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    |||| |||| ||||||||||||  |||| ||  |||| |||||||||||||||||||||||| |||||||    
T  28641658 aacttataataatcacttttaaatgaagttacccaaatataaatcaattcacatccaactcacatttaac 28641727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31224696 - 31224757
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||||||    ||  ||| |||||||||||||||||||||||||||||    
T  31224696 aactcataagaatcacttttagtaaaatatatccaaacataaatcaattcacatccaactca 31224757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 34997299 - 34997259
Alignment:
Q  48 tattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  34997299 tattcaaacataaatcaattcacatccaattcatttttaac 34997259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 2213516 - 2213583
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||| |||| ||||||||||||  ||  |||| ||||||||||||||||||||| |||||||    
T  2213516 aatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactca 2213583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 28127385 - 28127318
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||| |||| ||||||||||||  ||  |||| ||||||||||||||||||||| |||||||    
T  28127385 aatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactca 28127318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 11240693 - 11240747
Alignment:
Q  25 taagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactc 79  Q
    ||||||||| || |||  ||| |||||||||||||||||||||||||| ||||||    
T  11240693 taagaatcaattctaagtgaatgtattcaaacataaatcaattcacattcaactc 11240747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 45714750 - 45714692
Alignment:
Q  29 aatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactcatatttaa 87  Q
    ||||| ||||||| ||  |||| |||||||||||||||||||||| ||||||| |||||    
T  45714750 aatcatttttaacggagtgtatccaaacataaatcaattcacatcgaactcatttttaa 45714692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 7296199 - 7296240
Alignment:
Q  47 gtattcaaacataaatcaattcacatccaactcatatttaac 88  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  7296199 gtatccaaacataaatcaattcacatcaaactcatttttaac 7296240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 28261310 - 28261371
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    |||||||||||||||||| ||   ||  |||| |||| ||||||||||||||||||||||||    
T  28261310 aactcataagaatcacttctatgtgagagtatccaaatataaatcaattcacatccaactca 28261371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 16442450 - 16442383
Alignment:
Q  13 aatattaactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||| |||||||| |||||||||||||   |  |||| ||||||||||||||||||||| |||||||    
T  16442450 aatatcaactcatatgaatcacttttaaataagtgtatccaaacataaatcaattcacattcaactca 16442383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29409345 - 29409284
Alignment:
Q  19 aactcataagaatcacttttaaccgaaggtattcaaacataaatcaattcacatccaactca 80  Q
    ||||||||||||||| ||||||   |  |||| |||||||||||||||||||||| ||||||    
T  29409345 aactcataagaatcatttttaaaaaactgtatccaaacataaatcaattcacatcaaactca 29409284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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