View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21177_low_10 (Length: 269)
Name: NF21177_low_10
Description: NF21177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21177_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 8698143 - 8697902
Alignment:
| Q |
9 |
gaagaaaatatgcaagagtttgatgtgaaacctgtgaaacaagaaataggtgaatctgttgcacaacagaatggtaattattcttatggtggatctgagt |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8698143 |
gaagaaaatttgcaagagtttgatgtgaaacctgtgaaacaagaaataggtgaatctgttgcacaacagaatggtaattactcttatggtggatctgagt |
8698044 |
T |
|
| Q |
109 |
tgacttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttgatggagttaacactatggaatcggatgattctaatcaatctaaaat |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8698043 |
tgatttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttggtggagttaacactatggaatcagatgattctaatcaatctaaaat |
8697944 |
T |
|
| Q |
209 |
tggtgttaggaattgctccaatcttattaggcaaaagagttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8697943 |
tggtgttaggaattgctccaatcttattaggcaaaagagttc |
8697902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 9050030 - 9049789
Alignment:
| Q |
9 |
gaagaaaatatgcaagagtttgatgtgaaacctgtgaaacaagaaataggtgaatctgttgcacaacagaatggtaattattcttatggtggatctgagt |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9050030 |
gaagaaaatttgcaagagtttgatgtgaaacctgtgaaacaagaaataggtgaatctgttgcacaacagaatggtaattactcttatggtggatctgagt |
9049931 |
T |
|
| Q |
109 |
tgacttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttgatggagttaacactatggaatcggatgattctaatcaatctaaaat |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9049930 |
tgatttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttggtggagttaacactatggaatcagatgattctaatcaatctaaaat |
9049831 |
T |
|
| Q |
209 |
tggtgttaggaattgctccaatcttattaggcaaaagagttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9049830 |
tggtgttaggaattgctccaatcttattaggcaaaagagttc |
9049789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 13411388 - 13411356
Alignment:
| Q |
219 |
aattgctccaatcttattaggcaaaagagttct |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13411388 |
aattgctccaatcttattaggcaaaagagttct |
13411356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University