View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21177_low_7 (Length: 354)

Name: NF21177_low_7
Description: NF21177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21177_low_7
NF21177_low_7
[»] chr1 (3 HSPs)
chr1 (17-252)||(42457095-42457330)
chr1 (247-341)||(42456861-42456955)
chr1 (264-297)||(32801035-32801068)
[»] chr5 (1 HSPs)
chr5 (247-290)||(11056980-11057023)
[»] chr3 (2 HSPs)
chr3 (248-290)||(20261426-20261468)
chr3 (256-292)||(25119602-25119638)
[»] chr2 (2 HSPs)
chr2 (248-290)||(5328988-5329030)
chr2 (256-289)||(32505484-32505517)
[»] chr7 (1 HSPs)
chr7 (247-283)||(4171575-4171611)
[»] chr4 (1 HSPs)
chr4 (264-292)||(34671554-34671582)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 42457330 - 42457095
Alignment:
Q  17 tatgtgaccaaaatacaatcatatttctatgtgaccagattccgagaggaaggagtttctaaacaaaagtcatcaccatcgacgactactggttggccag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42457330 tatgtgaccaaaatacaatcatatttctatgtgaccagattccgagaggaaggagtttctaaacaaaagtcatcaccatcgacgactactggttggccag 42457231  T
Q  117 agattagacaatgccctgtttagtggcaatgggaaaactgttctagctaactttctttattgacatgacaccaacataatagtgcnnnnnnnnnnnnnca 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||    
T  42457230 agattagacaatgccctgtttagcggcaatgggaaaactgttctagctaactttctttattgacatgacaccaacataatagtgcaaaaaaaaaaaaaca 42457131  T
Q  217 aatttgataatcaataaatgtttatgttatttttta 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  42457130 aatttgataatcaataaatgtttatgttatttttta 42457095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 341
Target Start/End: Complemental strand, 42456955 - 42456861
Alignment:
Q  247 tttttaactttttatactatgcaagtttgcacatgatagaaaaatccataatgaatttatttattattgatttgatcgaccatacttttatgata 341  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  42456955 tttttaacttcttatactatgtaagtttgcgcatgatagaaaaatccatcataaatttatttattattgatttgatcgaccatacttttatgata 42456861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 32801068 - 32801035
Alignment:
Q  264 tatgcaagtttgcacatgatagaaaaatccataa 297  Q
    ||||||||||||||||||||||||||||| ||||    
T  32801068 tatgcaagtttgcacatgatagaaaaatctataa 32801035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 11056980 - 11057023
Alignment:
Q  247 tttttaactttttatactatgcaagtttgcacatgatagaaaaa 290  Q
    |||||| |||||||| |||||||||||||||||||||| |||||    
T  11056980 tttttatctttttatgctatgcaagtttgcacatgataaaaaaa 11057023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 20261468 - 20261426
Alignment:
Q  248 ttttaactttttatactatgcaagtttgcacatgatagaaaaa 290  Q
    |||| |||| |||||||||||||||| ||||||||||||||||    
T  20261468 ttttgacttcttatactatgcaagttcgcacatgatagaaaaa 20261426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 25119638 - 25119602
Alignment:
Q  256 ttttatactatgcaagtttgcacatgatagaaaaatc 292  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  25119638 ttttatactatacaagtttgcacatgatcgaaaaatc 25119602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 5329030 - 5328988
Alignment:
Q  248 ttttaactttttatactatgcaagtttgcacatgatagaaaaa 290  Q
    |||| |||||||| |||||||||||||| ||||||||||||||    
T  5329030 ttttgactttttaaactatgcaagtttggacatgatagaaaaa 5328988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 32505484 - 32505517
Alignment:
Q  256 ttttatactatgcaagtttgcacatgatagaaaa 289  Q
    |||||||||||||||||||||| |||||||||||    
T  32505484 ttttatactatgcaagtttgcaaatgatagaaaa 32505517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 4171575 - 4171611
Alignment:
Q  247 tttttaactttttatactatgcaagtttgcacatgat 283  Q
    |||||||||| |||||||||||||||| |||||||||    
T  4171575 tttttaacttcttatactatgcaagttcgcacatgat 4171611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 34671582 - 34671554
Alignment:
Q  264 tatgcaagtttgcacatgatagaaaaatc 292  Q
    |||||||||||||||||||||||||||||    
T  34671582 tatgcaagtttgcacatgatagaaaaatc 34671554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University