View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21177_low_8 (Length: 350)
Name: NF21177_low_8
Description: NF21177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21177_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 593790 - 594122
Alignment:
| Q |
1 |
gcatggttttgccggaggatgcatcacccatgatgctgcaaataggcgactggaggttcccagcactcggcttagaaggaacagcagacaattgctttgt |
100 |
Q |
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| T |
593790 |
gcatggttttgccggaggatgcatcacccatgatgctgcaaataggcgaccggaggttcccagcactcggcttagaaggaacagcagacaattgctttgt |
593889 |
T |
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| Q |
101 |
atgttgagtttcaccagccaccacagggttgaaaacagttctatttgtagcacctggtgtgtaaatagtatatattaggttacaacatgatctatctgat |
200 |
Q |
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| T |
593890 |
atgttgagtttcatcagccaccacagggttgaaaacagttctatttgtagcacctggtgtgtaaatagtatatattaggttacaacattatctatctgat |
593989 |
T |
|
| Q |
201 |
agatattatagtttaaccattatcatcatcaaaatcataattctaaagatttagttagcattacctttcttcatgaccggagcctccctcgaattccaac |
300 |
Q |
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| T |
593990 |
agatattatagtttaaccattatcatcatcaaaatcataattctaaagatttagttagcattacctttcttcatgaccggagcctccctcgaattccaac |
594089 |
T |
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| Q |
301 |
cgccttgatactgcggaggaggaggacgattct |
333 |
Q |
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| T |
594090 |
cgccttgatactgcggaggaggaggacgattct |
594122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 182291 - 182225
Alignment:
| Q |
22 |
catcacccatgatgctgcaaataggcgactggaggttcccagcactcggcttagaaggaacagcaga |
88 |
Q |
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| T |
182291 |
catcacctatgatgcagcaaataggcgaccgtaggttcccatcacccggcttacaaggcacagcaga |
182225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 44626546 - 44626493
Alignment:
| Q |
26 |
acccatgatgctgcaaataggcgactggaggttcccagcactcggcttagaagg |
79 |
Q |
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||||||||||| |||||| |||||| | |||||||| |||||||||||||||| |
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| T |
44626546 |
acccatgatgcagcaaattggcgaccgaaggttcccttcactcggcttagaagg |
44626493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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