View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_high_13 (Length: 324)
Name: NF21179_high_13
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 74 - 309
Target Start/End: Original strand, 49616336 - 49616569
Alignment:
| Q |
74 |
aatactactgttatcttgtggccatgtacgagtaaccctaatgatcagtgagtttgagcattgatataaaaacgatagtgattggcctgannnnnnnnnn |
173 |
Q |
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| T |
49616336 |
aataatactgttatcttgtggccatgtacgagtaaccctaatgatcagtgagtttgagcattgatataaaaacgatagtgattggcctgatttttttttt |
49616435 |
T |
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| Q |
174 |
naaaacctgtaagcttctttttagattacttatgccattatgttagacaaacccttcttaaaaacttaagccactatgttagtaaatgtctagtagttat |
273 |
Q |
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| T |
49616436 |
--aaacttgtaagcttttttttagattacttatgccattatgttagacaaacccttcttaaaaacttaagccactgtgttagtgaatgtctactagttat |
49616533 |
T |
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| Q |
274 |
ttcttttcaattgtactctcttattaatattgtaag |
309 |
Q |
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| T |
49616534 |
ttcttttcaattgtactctcttattaatattgtaag |
49616569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 49616276 - 49616304
Alignment:
| Q |
13 |
aatattaaatgtatagtttttggacatgt |
41 |
Q |
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| T |
49616276 |
aatattaaatgtatagtttttggacatgt |
49616304 |
T |
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