View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21179_high_9 (Length: 469)
Name: NF21179_high_9
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 40456285 - 40456693
Alignment:
| Q |
17 |
ttttcaacttgagaaacttatatatttccctcaccaaaagcatactgatagcagacctggtgaatagagaaccgaaggaactactaaatttgagctcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40456285 |
ttttcaacttgagaaacttatatatttccctcaccaaaagcatactgatagcagacctggtgaatagagaaccgaaggaactactaaatttgagctcaaa |
40456384 |
T |
|
| Q |
117 |
ggtacacctcgaatacagaatcagtaaaaccataacttgagttcctaggtagtcctcaaatacataaccaatacagaaaatggtgtatatgcctgaacct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40456385 |
ggtacacctcgaatacagaatcagtaaaaccataacttgagttcctaggtagtcctcaaatacataaccaatacagaaaatggtgtatatgcctgaacct |
40456484 |
T |
|
| Q |
217 |
tgttttgaatcattttgtatgactaggcaaggagagcacagctaagggatttgctccaagactggtaattgctaccgatgagaggaggggagacaagaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40456485 |
tgttttgaatcattttgtatgactaggcaaggagagcacagctaagggatttgctccaagactggtaattgctaccgatgagaggaggggagacaagaat |
40456584 |
T |
|
| Q |
317 |
agcaccaggattttcacca-ggtgaaggtaatacagagatgtgacaatgggacaagaatcaccattgttagagtactgagaagtagtagaactcgaagga |
415 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40456585 |
agcaccaggattttcaccagggtgaaggtaatacagagatgtgacaatgggacaagaatcaccattgttagagtactgagaagtagtagaactcgaagga |
40456684 |
T |
|
| Q |
416 |
tcttccatg |
424 |
Q |
| |
|
||||||||| |
|
|
| T |
40456685 |
tcttccatg |
40456693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 40286475 - 40286251
Alignment:
| Q |
17 |
ttttcaacttgagaaacttatatatttccctcaccaaaagcatactgatagcagacctggtgaatagagaaccgaaggaactactaaatttgagctcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40286475 |
ttttcaacttgagaaacttatatatttccctcaccaaaagcatactgatagcagacctggtgaatagagaaccgaaggaactactaaatttgagctcaaa |
40286376 |
T |
|
| Q |
117 |
ggtacacctcgaatacagaatcagtaaaaccataacttgagttcctaggtagtcctcaaatacataaccaatacagaaaatggtgtatatgcctgaacct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40286375 |
ggtacacctcgaatacagaatcagtaaaaccataacttgagttcctaggtagtcctcaaatacataaccaatacagaaaatggtgtatatgcctgaacct |
40286276 |
T |
|
| Q |
217 |
tgttttgaatcattttgtatgacta |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40286275 |
tgttttgaatcattttgtatgacta |
40286251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University