View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_10 (Length: 472)
Name: NF21179_low_10
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 34441818 - 34442275
Alignment:
| Q |
1 |
tctaaacttttgtaatctatatgttgatgtactttgaatgtaatcaatgaactgaatcatttatattcatggtatcaaccttctaattcttttaactgca |
100 |
Q |
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| T |
34441818 |
tctaaacttttgtaatctatatgttgatgtactttgaatgtaatcaatgaactgaatcatttatattcatggtatcaaccttctaattcttttaattgca |
34441917 |
T |
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| Q |
101 |
aattgataccatgacttcctcaagaaatgaccttatccattatcctgcatcatacaagaaatgtaactctcttcttattgcaagagatttggagggatat |
200 |
Q |
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| T |
34441918 |
aattgataccatgacttcctcaagaaatgactttatccattatcctgcatcatacaagaaatgtaactctcttcttattgcaagagatttggagggatat |
34442017 |
T |
|
| Q |
201 |
attagtggtaacaaaccctgcacaccaccaactgttccagatggtgactcctcctttacgatttcttcatattatatttggattcttcatagtctatatt |
300 |
Q |
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| T |
34442018 |
attagtggtaacaaaccctgcacaccaccaactgttccagatggtgactcctcctttacgatttcttcatattatatttggattcttcatagtctatatt |
34442117 |
T |
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| Q |
301 |
ttgcacatcttggatcgtgtgacgctgaagccagtgttttcatggaagcaacaagcacctcttgcgatgcatgatatgcactagaatgtgtggcttccag |
400 |
Q |
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| T |
34442118 |
ttgcacatcttggatcgtgtgacgctgaagccagtgttttcatggaagcaacaagcacctcttgcgatgcatgatatgcactagaatgcgtggcttccag |
34442217 |
T |
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| Q |
401 |
tcactcacactccaagattatgtctttgaaggaaagactcaactcttcttccacaggt |
458 |
Q |
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| T |
34442218 |
tcactcacactccaagattatgtctttgaaggaaagactcaactcttcttccataggt |
34442275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 34451625 - 34451716
Alignment:
| Q |
24 |
ttgatgtactttgaa-tgtaatcaatgaactgaatcatttatattcatggtatcaaccttctaattcttttaactgcaaattgataccatga |
114 |
Q |
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| T |
34451625 |
ttgatgtactttgaaatttcatcaatgaattgaatcatttatattcatgttatcagccttctaattcgtttagtcgcaaattgatcccatga |
34451716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 34467988 - 34468037
Alignment:
| Q |
46 |
aatgaactgaatcatttatattcatggtatcaaccttctaattcttttaa |
95 |
Q |
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| T |
34467988 |
aatgaattgaatcatttacattaatggtatcaaccttctaattcgtttaa |
34468037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 34468097 - 34468185
Alignment:
| Q |
164 |
taactctcttcttattgcaagagatttggagggatatattagtggtaacaaaccctgcacaccaccaactgttccagatggtgactcct |
252 |
Q |
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| T |
34468097 |
taactcttttctcattgcaagagatctggaacgatatattagtggtgacaaactttgctcatctccaagtattccagatggtggctcct |
34468185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 17881514 - 17881470
Alignment:
| Q |
79 |
ccttctaattcttttaactgcaaattgataccatgacttcctcaa |
123 |
Q |
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| T |
17881514 |
ccttctaattcgcttaacagcaaattgatcccatgacttcctcaa |
17881470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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